PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01978.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ZF-HD

Protein Properties

Length: 121aa MW: 12560.3 Da PI: 8.2607

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01978.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.6	8.1e-30	29	82	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY eC++NhAas+GghavDGC+Ef+++ ge+gtaaal+CaACgCHR+FHRr Pahal.F01978.1 29 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEDGTAAALRCAACGCHRSFHRRVA 82 68************************8.999******************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	26	No hit	No description
Pfam	PF04770	4.8E-29	30	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-24	31	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.469	32	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-13	38	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MMKRMVILRR CHPPPPPPAA VLMGGCGGGV RYGECRRNHA ASMGGHAVDG CREFLAEGED 60 GTAAALRCAA CGCHRSFHRR VARRCCCFFC CDDDAAAAGA RWGGGDGCSP ESSASSTTPR 120 *

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727008	2e-73	KJ727008.1 Zea mays clone pUT3984 ZF-HD transcription factor (ZHD19) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821999.1	3e-80	mini zinc finger protein 4-like
Swissprot	Q0J5F8	9e-35	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	A0A2S3I2R9	8e-79	A0A2S3I2R9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7D7Q2	8e-79	A0A2T7D7Q2_9POAL; Uncharacterized protein
STRING	Pavir.Fa00896.1.p	2e-41	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	6e-19	mini zinc finger 1

Link Out ? help Back to Top
Phytozome	Pahal.F01978.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]