PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01981.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 382aa MW: 42882.2 Da PI: 8.1173

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01981.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ Pahal.F01981.1 16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRPIYSS 109 689*************************.89***********9888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra +g ktdW+mhe+rl Pahal.F01981.1 110 eGTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-57	15	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.1	16	174	IPR003441	NAC domain
Pfam	PF02365	6.9E-26	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEARNDINMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE GTKCIGLKKS 120 LVFYKGRAAR GMKTDWMMHE FRLPSLNDPS LPKRPVDKTI PLNDSWTICR IFKKTSSMAQ 180 RALSHTWGPP LPGATEAEMF SAFQSVQASE FALESSSCSL QVAAPAPASQ FTSRHGLQGQ 240 QQQQNKVNNP SLDGSSCKLI NFNYSQSLEP QNFPITFPFE VQTSQKTTAA APMFFSTQPD 300 HLSGFVVDSS AEVNGGIGSR SQDPSTRKPG NGFSMNNSDW EAGGRINFPF DLGADSSEDW 360 RCNIPWESFL SPAAVQTELP H*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEARNDINMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE GTKCIGLKKS  120
LVFYKGRAAR GMKTDWMMHE FRLPSLNDPS LPKRPVDKTI PLNDSWTICR IFKKTSSMAQ  180
RALSHTWGPP LPGATEAEMF SAFQSVQASE FALESSSCSL QVAAPAPASQ FTSRHGLQGQ  240
QQQQNKVNNP SLDGSSCKLI NFNYSQSLEP QNFPITFPFE VQTSQKTTAA APMFFSTQPD  300
HLSGFVVDSS AEVNGGIGSR SQDPSTRKPG NGFSMNNSDW EAGGRINFPF DLGADSSEDW  360
RCNIPWESFL SPAAVQTELP H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	16	177	17	168	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	16	177	17	168	NAC domain-containing protein 19
4dul_B	2e-52	16	177	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822140.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	4e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2S3I2S6	0.0	A0A2S3I2S6_9POAL; Uncharacterized protein
STRING	Si015514m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01981.1

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]