PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01993.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 361aa MW: 37721.7 Da PI: 6.7843

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01993.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.4	1e-30	95	148	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt +LH+rFv av+qLGG+++AtPk++l++m v+gLtl+h+kSHLQkYRl Pahal.F01993.1 95 ARLRWTRQLHDRFVLAVAQLGGADRATPKSVLRAMAVPGLTLYHLKSHLQKYRL 148 7****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.257	91	151	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-31	92	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-15	94	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-22	95	149	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-6	96	147	IPR001005	SANT/Myb domain
Pfam	PF14379	9.6E-16	213	252	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MAWPPAASRT IFPCRRFAPG RIHTYTAGGG DGAGISPQAK QPPSSPATPA AAASHAGHAA 60 ADAATAIRSA AVVGTLEMAS SCGGGQQQQG GEARARLRWT RQLHDRFVLA VAQLGGADRA 120 TPKSVLRAMA VPGLTLYHLK SHLQKYRLAV SRGFITTPPG EGSNDPWSSS SEGQPDEYDE 180 DAAAEWRGAF AAADGGAAGT KEAPCDSPRS MARMQREVQR KLQEQVEVQR HLQLRIEAQG 240 RYLQSVLRRA EEVLADHSLG SPAAMAELSE LASAVESGCL SSSSSPSPSP PRRRSADSCI 300 TSSSSEAESQ AGTGSKRPCT CAAEQPVQGK RTFLQSHEAG EADADAEAED GSSPEIDLNR 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MAWPPAASRT IFPCRRFAPG RIHTYTAGGG DGAGISPQAK QPPSSPATPA AAASHAGHAA  60
ADAATAIRSA AVVGTLEMAS SCGGGQQQQG GEARARLRWT RQLHDRFVLA VAQLGGADRA  120
TPKSVLRAMA VPGLTLYHLK SHLQKYRLAV SRGFITTPPG EGSNDPWSSS SEGQPDEYDE  180
DAAAEWRGAF AAADGGAAGT KEAPCDSPRS MARMQREVQR KLQEQVEVQR HLQLRIEAQG  240
RYLQSVLRRA EEVLADHSLG SPAAMAELSE LASAVESGCL SSSSSPSPSP PRRRSADSCI  300
TSSSSEAESQ AGTGSKRPCT CAAEQPVQGK RTFLQSHEAG EADADAEAED GSSPEIDLNR  360
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-18	94	149	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-18	94	149	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-18	94	149	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-18	94	149	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968975	5e-76	EU968975.1 Zea mays clone 325336 MYR1 mRNA, complete cds.
GenBank	KJ726839	5e-76	KJ726839.1 Zea mays clone pUT3379 G2-like transcription factor (GLK6) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822647.1	0.0	myb family transcription factor PHL8-like
TrEMBL	A0A2S3I2R7	0.0	A0A2S3I2R7_9POAL; Uncharacterized protein
STRING	Pavir.J03046.1.p	1e-144	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-41	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.F01993.1