PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02006.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 319aa    MW: 35455.6 Da    PI: 6.5024
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02006.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.71.3e-2451131128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp+Gfr  P deel+++yL++k+ + +++   +i+++                  +e yfF++r +ky  g r++rat+     +tgkdk+v+ +
  Pahal.F02006.1   5 LPAGFRSFPADEELITCYLARKAMDASFTS-PAIRDASC---------------MQEGYFFCTRGSKYLPGVRARRATR---CCQTGKDKAVHGR 80 
                     799***********************9888.55666433...............2478*******************99...679********** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g+lvg +ktLvfy+grap+gekt W mhey++
  Pahal.F02006.1  81 DGRLVGRRKTLVFYRGRAPRGEKTGWAMHEYTM 113
                     *******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.6931137IPR003441NAC domain
SuperFamilySSF1019411.44E-324137IPR003441NAC domain
PfamPF023659.2E-166112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDQLLPAGFR SFPADEELIT CYLARKAMDA SFTSPAIRDA SCMQEGYFFC TRGSKYLPGV  60
RARRATRCCQ TGKDKAVHGR DGRLVGRRKT LVFYRGRAPR GEKTGWAMHE YTMGERSSSA  120
PLRGAQSEWV ICKVFVRKHP RGDERKVAPE EAVRDQDSTQ GHLLPVLPDG CDGHEQEAAP  180
PAVVTDSQHT ISHSGAHVME GNEKDHHQQQ HHHHQMVHEE LLLMIDHHGR CGASPSWFNH  240
DDQLGSHCSA LPVMQMQSDD ADYYLPGLLE YDGCDDLPND AGSGLLDTGG EVNRRAEIIT  300
SATIGPLHFD GFYWNFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-21513817166NO APICAL MERISTEM PROTEIN
1ut4_B9e-21513817166NO APICAL MERISTEM PROTEIN
1ut7_A9e-21513817166NO APICAL MERISTEM PROTEIN
1ut7_B9e-21513817166NO APICAL MERISTEM PROTEIN
4dul_A9e-21513817166NAC domain-containing protein 19
4dul_B9e-21513817166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822427.10.0NAC domain-containing protein 79-like
TrEMBLA0A2T8IH350.0A0A2T8IH35_9POAL; Uncharacterized protein
STRINGPavir.J11705.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-38Arabidopsis NAC domain containing protein 87