PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02020.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 246aa    MW: 26479.6 Da    PI: 5.1847
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.2e-3581168376
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec...eae 76 
                      ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l +             + ss+s+c   ++ 
  Pahal.F02020.1  81 YRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLHDAadppavvtgrgeG-SSSSACcfeDPR 168
                     589************************************************************5555555555532.222344454222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-3382160IPR005333Transcription factor, TCP
PROSITE profilePS5136933.98582140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MPATASMSDW DGYGAQIFPA DMMLRHQETL EAVLQQPVAV VAPLRAPEAA AGEGELRDAA  60
PAAVADGAGA HGAAVPRRRP YRTDRHSKIR TAQGVRDRRM RLSVGVAREF FALQDRLGFD  120
KASKTVNWLL TQSKPAIDRL HDAADPPAVV TGRGEGSSSS ACCFEDPRED EEAAGKGRSR  180
GVGRYGPAAA LMEEHGGGEV DWITSDAAAA APPQPPQPMD ELEYYYQYYL QLEEMMRCNN  240
GGVPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-1487140154Putative transcription factor PCF6
5zkt_B9e-1487140154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634572e-83BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBankEU9756362e-83EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7268962e-83KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822665.11e-179transcription factor TB1-like
TrEMBLA0A2S3I3G21e-178A0A2S3I3G2_9POAL; Uncharacterized protein
STRINGSi015230m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.27e-26TCP family protein