PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02023.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26802.3 Da    PI: 8.479
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02023.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.3e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n + rqvtfskRr g++KKA+EL +LCdaev +i+fsstg+ly+++s
  Pahal.F02023.1  9 KRIDNATSRQVTFSKRRSGLFKKAKELAILCDAEVGLIVFSSTGRLYDFAS 59
                    79***********************************************86 PP
2K-box77.24.3e-2679170798
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +  ++a+a+ +q+e+  L+++++nLq+ qR+llG++L+ L++k+Lq+Le++Le sl++iR kK++l+++qi+el +k   +++en +L +k+
  Pahal.F02023.1  79 TMSASAEAKLWQREAGSLRQQLHNLQEHQRQLLGQQLSGLDVKDLQNLETKLEMSLRNIRIKKDQLMIDQIQELNRKGSLMHQENIELYNKV 170
                     335788899*******************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.674161IPR002100Transcription factor, MADS-box
CDDcd002652.27E-45278No hitNo description
SuperFamilySSF554551.05E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2583170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.82686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KAKELAILCD AEVGLIVFSS TGRLYDFAST  60
SMKSVIERYS EAKEDHHQTM SASAEAKLWQ REAGSLRQQL HNLQEHQRQL LGQQLSGLDV  120
KDLQNLETKL EMSLRNIRIK KDQLMIDQIQ ELNRKGSLMH QENIELYNKV NLVHQENIEL  180
RRKVYGHEVN EHPESSTVRH GMLNTENEDV LVNLELSQPQ SVQRDKSETP STG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23186187MEF2C
5f28_B2e-23186187MEF2C
5f28_C2e-23186187MEF2C
5f28_D2e-23186187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821378.11e-171MADS-box transcription factor 23-like
SwissprotQ6EP491e-95MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2S3I2P01e-170A0A2S3I2P0_9POAL; Uncharacterized protein
STRINGPavir.Fb01587.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-84AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]