PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02100.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 117aa MW: 13164.2 Da PI: 10.4645

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.3	3e-08	16	59	8	50
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkR.WPhRkik 50 +d++ +l +kdAA L+ ++ +L C ++G +R WP ki+ Pahal.F02100.1 16 SDVRDVLHLRLKDAAAALNASTIYLRHLCHKNGFPRgWPGKKIR 59 7899999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.625	1	83	IPR003035	RWP-RK domain
Pfam	PF02042	5.5E-8	15	59	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MARRTTRPQA SRPEWSDVRD VLHLRLKDAA AALNASTIYL RHLCHKNGFP RGWPGKKIRY 60 LRATGKTFTL ADIMETKKMT DEDMVRIHEP VVTNHPPGEL ATLNLIDKVG MQSSSE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662757.1	6e-21	protein RKD4
TrEMBL	A0A3L6PM42	2e-78	A0A3L6PM42_PANMI; Protein RKD4-like
STRING	Pavir.Fa01691.1.p	5e-69	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18443	5	9

Link Out ? help Back to Top
Phytozome	Pahal.F02100.1