PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02290.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 188aa MW: 21248 Da PI: 6.9754

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.8e-09	99	133	4	38
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38 WT+ E+ +++++ +++G ++Wk I++++ ++Rt+ Pahal.F02290.1 99 WTKAEHRQFLRGLQMYGRDDWKNISKYFATTRTPL 133 *****************************999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-7	98	132	IPR009057	Homeodomain-like
CDD	cd00167	1.38E-8	99	134	No hit	No description
SuperFamily	SSF46689	1.42E-8	99	134	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.249	99	134	IPR017877	Myb-like domain
Pfam	PF00249	2.8E-7	99	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MDSTMSNGEW SASEINMVKS LKHSNIVHEI QTMFPIKEKH QVIHLYVDLM VEMIPSGTGD 60 GSYHSATTSS NLIWVMRVAQ EVPRRQPPPR MERAHTRFWT KAEHRQFLRG LQMYGRDDWK 120 NISKYFATTR TPLQPQAAAW AGDQQIGATN SSAAPVMEGD GGSRAAWFAG DQLGDFFHDQ 180 MMNMDIF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966689.1	2e-59	uncharacterized protein LOC101759880
TrEMBL	A0A3L6PF69	3e-78	A0A3L6PF69_PANMI; Uncharacterized protein
STRING	Pavir.Da02101.1.p	8e-69	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01200.1	2e-12	MYB family protein

Link Out ? help Back to Top
Phytozome	Pahal.F02290.1