PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02357.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 668aa    MW: 72992.9 Da    PI: 6.4286
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02357.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28221274155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Pahal.F02357.1 221 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 274
                     79*******************.********************************8 PP
2Response_reg75.12.7e-25321401109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + + + +  G
  Pahal.F02357.1  32 VLAVDDDPVCLKVLETLLRRCRY-HVTTTNQAIMALKLLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVMKGITHG 124
                     799********************.***************99999********************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel++
  Pahal.F02357.1 125 ACDYLLKPVRIEELRN 140
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.2E-1997667IPR017053Response regulator B-type, plant
SuperFamilySSF521722.13E-3429156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4029175No hitNo description
SMARTSM004483.8E-2930142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.25731146IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2232141IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.26E-2533145No hitNo description
PROSITE profilePS5129411218277IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-30219279IPR009057Homeodomain-like
SuperFamilySSF466891.25E-19219278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25221274IPR006447Myb domain, plants
PfamPF002491.2E-6223273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MLLGASAAGM EEEKKGVMMG RERDQFPVGM RVLAVDDDPV CLKVLETLLR RCRYHVTTTN  60
QAIMALKLLR ENRDMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NGETKSVMKG  120
ITHGACDYLL KPVRIEELRN IWQHVVRRKF SKRERSNLDI YKDFNKPPSA DSCHGHNQIV  180
GGAPDQSGRV SKKRKEMHSD EEDEGEENDL QEGDEPSATK KPRVVWSVEL HRKFVAAVNQ  240
LGIDKAVPKR ILELMNVEKL TRENVASHLQ KYRLYLKRLS AVASQQASIV AAFGGRDPSF  300
LHMGAFEGIQ GYQPFVPSAA LSSFNPHGLL TGTSAATFGV QELAPTMTVQ TATNNAIIGH  360
CTSDGNKFQY VGLQENQPAN LPRGSTTPLG LPQLQQKWIH QENNDLSTVF SGSALANSLS  420
GALQRVTSSP LPPQELLECA QAKLTIRPSM PMPSMNSELV ERTVGVSSNL QDSSVSQQGA  480
LPINDAFSTD KLQLHDPFDG TSGTKFSVTM PVCPTGSLTA TNNKSGASSC GTVLLPPDTG  540
RHSNYLQFAG AGNSRHEIDG MKQDHLHNQE MSIGSFNHDF GACMTEQTNA SMSSLMPQMK  600
INSLTSEDKL KQKNIYDLGI PKLHGGFSSS SCNFDGLLSS MIKAEKDDLS FTDNDLGCDL  660
FPLGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24217280164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810502.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2S3HLT10.0A0A2S3HLT1_9POAL; Two-component response regulator
STRINGPavir.J08270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]