PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02452.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 219aa    MW: 23015.6 Da    PI: 5.0425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02452.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-172472355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr +k +grWv+eIr p++   r r++lg+++ +e+Aa+a +aa ++l+g
  Pahal.F02452.1 24 YKGVRLRK-WGRWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAYLCLRG 72
                    9*****99.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-242382IPR001471AP2/ERF domain
PROSITE profilePS5103220.9692382IPR001471AP2/ERF domain
PfamPF008475.7E-102372IPR001471AP2/ERF domain
SMARTSM003803.8E-272388IPR001471AP2/ERF domain
CDDcd000183.48E-232482No hitNo description
PRINTSPR003674.7E-82435IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-172482IPR016177DNA-binding domain
PRINTSPR003674.7E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVRPSNAAPP ERSSPPPGER RRSYKGVRLR KWGRWVSEIR LPNSRERIWL GSYDAPEKAA  60
RAFDAAYLCL RGPGGAGGLN FPGSPPDVGR TSDPEEVYAV AVSHANRAAA VDAAAPWDDA  120
TEQPSEPHDG GAPVHAAAVP PAPAAAPLQV PARSSDWAQL LMADLPPLFS PTYAENHGYL  180
PVSPTAADVN MDEIGSGSCP GLWSFDPSGA PVTDHVDI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813239.11e-154ethylene-responsive transcription factor ERF015-like
TrEMBLA0A2S3HL331e-153A0A2S3HL33_9POAL; Uncharacterized protein
STRINGPavir.Da01882.1.p7e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-23ERF family protein