PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02522.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 584aa    MW: 63389.8 Da    PI: 6.464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02522.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44.1e-30266322259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg+nWrKYGqK+vk+se++rsYYrCts+gC++kkkve++  d++vvei+Y+g Hnhe
  Pahal.F02522.1 266 ADGFNWRKYGQKQVKSSENSRSYYRCTSSGCSAKKKVEHCP-DGRVVEIIYRGAHNHE 322
                     7****************************************.***************8 PP
2WRKY100.51e-31433490259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Pahal.F02522.1 433 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 490
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.355260324IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-27262324IPR003657WRKY domain
SuperFamilySSF1182901.57E-23263324IPR003657WRKY domain
SMARTSM007745.2E-33265323IPR003657WRKY domain
PfamPF031065.8E-23267322IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-31426492IPR003657WRKY domain
PROSITE profilePS5081132.948427492IPR003657WRKY domain
SuperFamilySSF1182902.48E-27427492IPR003657WRKY domain
SMARTSM007741.2E-35432491IPR003657WRKY domain
PfamPF031061.6E-25434490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MADGDPEPAP AREKPSAPAA AVEVEETRPP PPEPPGGLVD EKRQSKEEAA AAEVETRPPP  60
ETPGAPPAEN REKEAEAEAK ERKEVEKGMG DETTETKEKR GEEDKGKGEK QGKEKMKEEE  120
AKEKEAAKEK AEAKGKVKVH AVVKVEGTEK EVKPTRRPAG ASAETPILAV PVVAVPCFIA  180
PSGFAGQFAM THQAALASVT AQAQMHLQSP TTSTCSEAPS SPFYITPRSI VPLQQSPSTE  240
GNVCRQLADK PFSSEPKSPH LVNMVADGFN WRKYGQKQVK SSENSRSYYR CTSSGCSAKK  300
KVEHCPDGRV VEIIYRGAHN HEPPPKTRFA KEKVTPISVP SGGETLRLVN TEILESSTPT  360
CKSDHFAVSE TCEQQLFCSS DCEGDAGNKS EDEHPSAEPV PKRRVIETTA PNLTPVLRTV  420
REQKIIVQAG KMSDGYRWRK YGQKIVKGNP NPRSYYRCTH GGCPVRKHVE KAPDDVNNIV  480
VTYEGKHNHD EPFRSNSIPV SAISPPVATI EQPNTSTTTS DEKPPTITQK DAYGESDKET  540
TLEFGGEKAL ESAQTLLSIK TNSEDMKNSV LKETSSAVPV QNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-252624921477Probable WRKY transcription factor 4
2lex_A2e-252624921477Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820376.10.0probable WRKY transcription factor 32 isoform X1
TrEMBLA0A2S3I1Z40.0A0A2S3I1Z4_9POAL; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-67WRKY DNA-binding protein 4