PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02522.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 582aa    MW: 63204.6 Da    PI: 6.464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02522.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44.1e-30264320259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg+nWrKYGqK+vk+se++rsYYrCts+gC++kkkve++  d++vvei+Y+g Hnhe
  Pahal.F02522.2 264 ADGFNWRKYGQKQVKSSENSRSYYRCTSSGCSAKKKVEHCP-DGRVVEIIYRGAHNHE 320
                     7****************************************.***************8 PP
2WRKY100.51e-31431488259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Pahal.F02522.2 431 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 488
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.355258322IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-27260322IPR003657WRKY domain
SuperFamilySSF1182901.57E-23261322IPR003657WRKY domain
SMARTSM007745.2E-33263321IPR003657WRKY domain
PfamPF031065.8E-23265320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-31424490IPR003657WRKY domain
PROSITE profilePS5081132.948425490IPR003657WRKY domain
SuperFamilySSF1182902.48E-27425490IPR003657WRKY domain
SMARTSM007741.2E-35430489IPR003657WRKY domain
PfamPF031061.5E-25432488IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MADGDPEPAP AREKPSAPAA AVEVEETRPP PPEPPGGLVD EKRQSKEEAA AAEVETRPPP  60
ETPGAPPAEN REKEAEAEAK ERKEVEKGMG DETTETKEKR GEEDKGKGEK QGKEKMKEEE  120
AKEKEAAKEK AEAKGKVKVH AVVKVEGTEK EVKPTRRPAG ASAETPILAV PVVAVPCFIA  180
PSGFAFAMTH QAALASVTAQ AQMHLQSPTT STCSEAPSSP FYITPRSIVP LQQSPSTEGN  240
VCRQLADKPF SSEPKSPHLV NMVADGFNWR KYGQKQVKSS ENSRSYYRCT SSGCSAKKKV  300
EHCPDGRVVE IIYRGAHNHE PPPKTRFAKE KVTPISVPSG GETLRLVNTE ILESSTPTCK  360
SDHFAVSETC EQQLFCSSDC EGDAGNKSED EHPSAEPVPK RRVIETTAPN LTPVLRTVRE  420
QKIIVQAGKM SDGYRWRKYG QKIVKGNPNP RSYYRCTHGG CPVRKHVEKA PDDVNNIVVT  480
YEGKHNHDEP FRSNSIPVSA ISPPVATIEQ PNTSTTTSDE KPPTITQKDA YGESDKETTL  540
EFGGEKALES AQTLLSIKTN SEDMKNSVLK ETSSAVPVQN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-252604901477Probable WRKY transcription factor 4
2lex_A2e-252604901477Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820377.10.0probable WRKY transcription factor 32 isoform X2
TrEMBLA0A2S3I1Z00.0A0A2S3I1Z0_9POAL; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.14e-67WRKY DNA-binding protein 4