PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02656.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 279aa    MW: 30398.6 Da    PI: 4.4474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02656.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.5e-2081134356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  Pahal.F02656.1  81 KKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 134
                     56789************************************************9 PP
2HD-ZIP_I/II132.61.5e-4280171192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl++eqv+lLE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+dy++Lk+aydal+++++ L +++++Lr+++ 
  Pahal.F02656.1  80 EKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDYDRLKAAYDALAADHQGLLADNDSLRAQVI 171
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.20476136IPR001356Homeobox domain
SMARTSM003896.9E-1979140IPR001356Homeobox domain
SuperFamilySSF466896.27E-1980145IPR009057Homeodomain-like
CDDcd000863.33E-1881137No hitNo description
PfamPF000464.0E-1781134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-2182143IPR009057Homeodomain-like
PRINTSPR000314.5E-6107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6116132IPR000047Helix-turn-helix motif
PfamPF021831.4E-16136178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDPDRVGVDS GGARRGGGGA GGAQMLLFGG GGSANSNGFF RGIPMAVLGM DDAARVGKRP  60
FFTTHEELLE EEYYDEQAPE KKRRLTAEQV QLLERSFEEE NKLEPERKTE LARRLGMAPR  120
QVAVWFQNRR ARWKTKQLET DYDRLKAAYD ALAADHQGLL ADNDSLRAQV ISLTEKLQGK  180
DTSPSVTIAA QEVDQLDEHT AASGTEKLLV QQLKDDLLSS GDCTGPGALS SEEEDGGVIS  240
DEGCSFDLPD ALFTAVGVTH HGAEEAQLCN WNSWLWNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9597010.0EU959701.1 Zea mays clone 219449 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821611.10.0homeobox-leucine zipper protein HOX5-like
SwissprotQ6ZA741e-113HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLA0A2S3I2D70.0A0A2S3I2D7_9POAL; Uncharacterized protein
TrEMBLA0A2T7D7610.0A0A2T7D761_9POAL; Uncharacterized protein
STRINGPavir.Fb01301.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-54homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]