PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02784.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 274aa MW: 31000.7 Da PI: 5.2853

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02784.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	66.5	5.2e-21	3	73	15	85
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al++lGf +y++++ + Pahal.F02784.2 3 KIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYIDEVYA 73 89*****************************************************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.32E-30	2	120	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.4E-32	3	119	IPR009072	Histone-fold
Pfam	PF00808	1.2E-17	3	59	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE VCSREEKKTI APEHVLKALS 60 DLGFREYIDE VYAAYEQHKL DTLDSPKASK FTGIEMTEEE AVAEQQRMFA EARARMNNGA 120 PKPKEPEQEQ QQQQPHPQLQ LHTPPQQPMQ PQLQLHSPTQ QSLQPQLQLH PQPPQHPQAQ 180 LHSQSQQPQV QPQQPPQVQL HPQLQQTPQP QQPPQAPLHP QPQQTPQAPL HPSPEQPEPQ 240 VHLQSHELPQ AQLQPQLQAQ PQPQAQTEHG GDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	5e-30	3	113	23	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035946	0.0	BT035946.1 Zea mays full-length cDNA clone ZM_BFb0089E11 mRNA, complete cds.
GenBank	BT042253	0.0	BT042253.1 Zea mays full-length cDNA clone ZM_BFb0180H13 mRNA, complete cds.
GenBank	BT061307	0.0	BT061307.1 Zea mays full-length cDNA clone ZM_BFb0133I20 mRNA, complete cds.
GenBank	EU976670	0.0	EU976670.1 Zea mays clone 986701 repressor protein mRNA, complete cds.
GenBank	HQ858755	0.0	HQ858755.1 Zea mays clone UT1497 CCAAT1-Dr1 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821814.1	0.0	protein Dr1 homolog
TrEMBL	A0A2S3I249	0.0	A0A2S3I249_9POAL; Uncharacterized protein
STRING	Si014159m	1e-103	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	2e-64	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Pahal.F02784.2