PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02974.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 424aa    MW: 47310.5 Da    PI: 8.0589
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02974.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR439.2e-142360341
             TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                     k+C+Ck+skClk+YC+Cfa g++C++ C+C++C N+ +
  Pahal.F02974.1 23 IKNCKCKNSKCLKLYCDCFATGRYCKD-CNCTNCYNNGS 60
                    699************************.********976 PP
2TCR49.96.3e-16108147140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k+++gCnC+ks+ClkkYC Cf++++ Cs++C+C dCkN+e
  Pahal.F02974.1 108 KHTRGCNCRKSECLKKYCGCFQSNVLCSDNCTCMDCKNSE 147
                     5899**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.1E-102161IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.3622148IPR005172CRC domain
PfamPF036383.5E-102458IPR005172CRC domain
SMARTSM011141.2E-16108149IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.1E-12111146IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLNSQNPWTE TLSGSKDKAP ERIKNCKCKN SKCLKLYCDC FATGRYCKDC NCTNCYNNGS  60
HENARARQDA INAVLERRTA AFMPKAGSRS CAMQSSVGKE ADDPHLGKHT RGCNCRKSEC  120
LKKYCGCFQS NVLCSDNCTC MDCKNSESIE DGKSIRCIAR KHAVFVQNKQ NYALSGILGP  180
SSVLPHTTKN DSVISMSASG ILHPISNNGS SQTLMSLPTS VDDDKGLVSE RNTNGLSELG  240
AHEVTYRSVL ADIVQVEDVN ELCKLLILAS RQAAKAFLDI NTSTKKLDRA ESCLSSTNSD  300
REAVQKEPDT HECLPESSSY EWNNTNRPGS PGSQNLPDIF IEQEKRVLKI FRDYLCMLAY  360
CGRVKGRASI AFPEQNIVST GDDQILTREY RWLEHYWIHE SYLCKWHSFQ KNLIRAERFL  420
AAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-212415512130Protein lin-54 homolog
5fd3_B4e-212415512130Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.11e-118protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.11e-118protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLA0A2T8IGM20.0A0A2T8IGM2_9POAL; Uncharacterized protein
STRINGPavir.J06198.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.17e-44Tesmin/TSO1-like CXC domain-containing protein