PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00029.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 369aa MW: 39671.9 Da PI: 9.2853

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00029.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.6e-56	23	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ Pahal.G00029.1 23 LPPGFRFHPTDEELITYYLRHKIADGSFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIYTG 116 79***********************999.89***********99999************************************97 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + elvg+kktLvfykgrap+gekt+Wvmheyrl Pahal.G00029.1 117 qlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 153 66666667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	20	174	IPR003441	NAC domain
PROSITE profile	PS51005	60.989	23	174	IPR003441	NAC domain
Pfam	PF02365	2.2E-29	24	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MEGSAAAAGG GGAGGGSKKE DSLPPGFRFH PTDEELITYY LRHKIADGSF TARAIAEVDL 60 NKCEPWDLPE KAKLGEKEWY FFSLRDRKYP TGVRTNRATN AGYWKTTGKD KEIYTGQLPA 120 TPELVGMKKT LVFYKGRAPR GEKTNWVMHE YRLHSKSAPK SNKDEWVVCR VFAKSAGVKK 180 YPSNNAHSRS HHHPYTLDMV PPLLPTLLQH DPFARGPHHP YMTPADLAEL ARFARGTPGL 240 HPHIQPHPGT AAAYINPTAV APPFTLSGGL SLNLGASPAM PSPPPPPLHA MSMAMSHQIA 300 PSGAGAAGSH HQVMAGDHHQ QMAPAGLGGC VIAPGADAGF GADAAGARYQ SLDVEQLVER 360 YWPAGYQV*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MEGSAAAAGG GGAGGGSKKE DSLPPGFRFH PTDEELITYY LRHKIADGSF TARAIAEVDL  60
NKCEPWDLPE KAKLGEKEWY FFSLRDRKYP TGVRTNRATN AGYWKTTGKD KEIYTGQLPA  120
TPELVGMKKT LVFYKGRAPR GEKTNWVMHE YRLHSKSAPK SNKDEWVVCR VFAKSAGVKK  180
YPSNNAHSRS HHHPYTLDMV PPLLPTLLQH DPFARGPHHP YMTPADLAEL ARFARGTPGL  240
HPHIQPHPGT AAAYINPTAV APPFTLSGGL SLNLGASPAM PSPPPPPLHA MSMAMSHQIA  300
PSGAGAAGSH HQVMAGDHHQ QMAPAGLGGC VIAPGADAGF GADAAGARYQ SLDVEQLVER  360
YWPAGYQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-56	22	180	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-56	22	180	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-56	22	180	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-56	22	180	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-56	22	180	19	174	NAC domain-containing protein 19
3swm_B	6e-56	22	180	19	174	NAC domain-containing protein 19
3swm_C	6e-56	22	180	19	174	NAC domain-containing protein 19
3swm_D	6e-56	22	180	19	174	NAC domain-containing protein 19
3swp_A	6e-56	22	180	19	174	NAC domain-containing protein 19
3swp_B	6e-56	22	180	19	174	NAC domain-containing protein 19
3swp_C	6e-56	22	180	19	174	NAC domain-containing protein 19
3swp_D	6e-56	22	180	19	174	NAC domain-containing protein 19
4dul_A	6e-56	22	180	16	171	NAC domain-containing protein 19
4dul_B	6e-56	22	180	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803276.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	7e-83	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2S3H1A1	0.0	A0A2S3H1A1_9POAL; Uncharacterized protein
STRING	Pavir.J02772.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	4e-91	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Pahal.G00029.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]