PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00210.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 485aa    MW: 51562.7 Da    PI: 9.373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00210.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.85.4e-84764721374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l +lLl+ + a ++gd ++a+a+L ++  las  g dp  R+aayf+ A+a rl           p++++s     e++ a+++f+ +sP+++f+
  Pahal.G00210.2  76 LMHLLLSSVAAGEAGDVRAATAALHEVYRLASFGGgDPAPRVAAYFADAMAPRLRL-------RPPAEASSAPARGEQFLAYTMFYRASPLYQFA 163
                     5799****************************9999******************97.......233333444447888999************** PP

            GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg..............ppslRiTgvgspesgskeeleetgerLakfAeel. 172
                     h+taNqaI+ea+eg   + +H++Dfd+s+G+QWp+L+q+L++ ++               p slRiTg+g     s++el++t+ rL++fA+ + 
  Pahal.G00210.2 164 HFTANQAIVEAFEGGgrRSLHVVDFDVSYGFQWPSLIQSLSDAADAastsgsqdgdrrerPVSLRITGLGT----SADELRQTEARLTRFASGCp 254
                     *************9877889********************9887333455677788888677*********....9***************9876 PP

            GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerfleale 262
                     +v+fef+ +v+++ ++ + e+++ + + +++Vnl++   +  + s+       + L l++sl+P +v +ve+      ++++++s+l  f+ +l+
  Pahal.G00210.2 255 NVRFEFEGIVTNEQNSGRHERIKNDDDATVVVNLAFPAAQSSRASARE---ACSALALIRSLNPSLVFLVERGgggnaTSRGRSSLLPPFTASLR 346
                     9***********************************888776444444...569******************944432333566*********** PP

            GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvac.....egaerr..erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg. 348
                     y++a+fdsl+++lp++s er  +Er +lg ei+n+va       g++r+  e + + ++W+e++e+aGF++vpls+++++qaklll++ +   g 
  Pahal.G00210.2 347 YFAAVFDSLHESLPADSAERLAIERNYLGTEIRNAVASldrshGGDDRTaaEPCSSSASWKEMMESAGFEAVPLSSRTVSQAKLLLKMKSgC-Gg 440
                     ************************************9622222455554226678899****************************997632.22 PP

            GRAS 349 ...yrve..eesgslv.lgWkdrpLvsvSaWr 374
                        +rv    + g ++ lgW+d +L++++aWr
  Pahal.G00210.2 441 gggFRVVveGDGGRAMsLGWRDSALITTTAWR 472
                     45688873244555556**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.67350445IPR005202Transcription factor GRAS
PfamPF035141.9E-8176472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MNLTLSLAVN GGTGTGTGKK RKVRDGVVDD VVGDGGDRGR VVRLLQARER MVARLESDDQ  60
RVAPDDAAGG GGGLRLMHLL LSSVAAGEAG DVRAATAALH EVYRLASFGG GDPAPRVAAY  120
FADAMAPRLR LRPPAEASSA PARGEQFLAY TMFYRASPLY QFAHFTANQA IVEAFEGGGR  180
RSLHVVDFDV SYGFQWPSLI QSLSDAADAA STSGSQDGDR RERPVSLRIT GLGTSADELR  240
QTEARLTRFA SGCPNVRFEF EGIVTNEQNS GRHERIKNDD DATVVVNLAF PAAQSSRASA  300
REACSALALI RSLNPSLVFL VERGGGGNAT SRGRSSLLPP FTASLRYFAA VFDSLHESLP  360
ADSAERLAIE RNYLGTEIRN AVASLDRSHG GDDRTAAEPC SSSASWKEMM ESAGFEAVPL  420
SSRTVSQAKL LLKMKSGCGG GGGFRVVVEG DGGRAMSLGW RDSALITTTA WRRRRRRSIS  480
KTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-428947432381Protein SCARECROW
5b3h_A2e-428947431380Protein SCARECROW
5b3h_D2e-428947431380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471476RRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432540.0AC243254.2 Panicum virgatum clone PV_ABa094-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823551.10.0scarecrow-like protein 23
TrEMBLA0A2S3I6M10.0A0A2S3I6M1_9POAL; Uncharacterized protein
STRINGSi009972m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.13e-39GRAS family protein