PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00246.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 179aa MW: 20119.5 Da PI: 4.3711

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00246.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.2e-33	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGf+F P+deelvv++L++k++ +++ ++++++ +++++Pw+L+ k+ + ++wyfFs++ ++r+t +gyW++ d+ v+s Pahal.G00246.2 7 LPPGFHFFPSDEELVVHFLRHKASLLPCQP-DIVPTILLNHYDPWELNDKALQAGNQWYFFSHAT--------QSRVTPNGYWSSICADEMVKS- 91 79***********************999.89**********966667789**975........5799***********99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++glkktLvf g+ ++g +t+W+mhey+l Pahal.G00246.2 92 SGCNIGLKKTLVFSIGEPSEGIETNWIMHEYHL 124 9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-45	4	140	IPR003441	NAC domain
PROSITE profile	PS51005	39.996	7	142	IPR003441	NAC domain
Pfam	PF02365	4.1E-22	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGGASDLPPG FHFFPSDEEL VVHFLRHKAS LLPCQPDIVP TILLNHYDPW ELNDKALQAG 60 NQWYFFSHAT QSRVTPNGYW SSICADEMVK SSGCNIGLKK TLVFSIGEPS EGIETNWIMH 120 EYHLLDGRKE SNNWVICRVF DSTCGSQANF HEEGMELSCL DEVFLSLDDY DEVSLSNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-37	7	147	20	173	NAC domain-containing protein 19
3swm_B	9e-37	7	147	20	173	NAC domain-containing protein 19
3swm_C	9e-37	7	147	20	173	NAC domain-containing protein 19
3swm_D	9e-37	7	147	20	173	NAC domain-containing protein 19
3swp_A	9e-37	7	147	20	173	NAC domain-containing protein 19
3swp_B	9e-37	7	147	20	173	NAC domain-containing protein 19
3swp_C	9e-37	7	147	20	173	NAC domain-containing protein 19
3swp_D	9e-37	7	147	20	173	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823282.1	1e-132	NAC domain-containing protein 104-like isoform X2
Swissprot	Q8GWK6	9e-61	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2S3I6Q7	1e-130	A0A2S3I6Q7_9POAL; Uncharacterized protein
STRING	Pavir.J14631.1.p	1e-122	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-63	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Pahal.G00246.2

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]