PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00294.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 661aa    MW: 73110.2 Da    PI: 5.6707
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00294.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-24128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+  + ++
  Pahal.G00294.1 128 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPKRHLLTTGWSVFVSSKRLVAGDAFIFM--RGEN 219
                     99*****************************7556666.59************************************************..4499 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +el+v+v+r
  Pahal.G00294.1 220 GELRVGVRR 228
                     99*****97 PP
2Auxin_resp99.64.2e-33254339183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe+++++err+sGt++++     ++ + W +S WrsLk
  Pahal.G00294.1 254 ASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFKMRFEGDEAPERRFSGTIIDIGSlpaMSKSLWADSDWRSLK 339
                     789*************************************************************997622267778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-44115257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-41125243IPR015300DNA-binding pseudobarrel domain
CDDcd100179.26E-22126228No hitNo description
PROSITE profilePS5086311.716128230IPR003340B3 DNA binding domain
PfamPF023625.7E-22128228IPR003340B3 DNA binding domain
SMARTSM010193.6E-21128230IPR003340B3 DNA binding domain
PfamPF065072.1E-31254339IPR010525Auxin response factor
PfamPF023091.9E-12542638IPR033389AUX/IAA domain
PROSITE profilePS5174527.002549642IPR000270PB1 domain
SuperFamilySSF542775.23E-12551628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAAAMDVANP GAAAGSGMAS DALYRELWHA CAGPLVTVPR QGERVYYFPQ GHMEQLEAST  60
HQQLDQYLPM FNLPSKILCS VVNVELRAEA DSDEVYAQIM LQPEADQSEL TSPDPELKEP  120
EKCTAHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMS QNPPCQELVA KDLHGTEWHF  180
RHIFRGQPKR HLLTTGWSVF VSSKRLVAGD AFIFMRGENG ELRVGVRRLM RQVNSMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSDFIVS VNKYLEAKKQ KISVGMRFKM  300
RFEGDEAPER RFSGTIIDIG SLPAMSKSLW ADSDWRSLKV QWDEPSSILR PDRISPWEVE  360
PLDAANPQSP QPPLRNKRAR PPASPSTVAE LPSGFGLWKS PTDSARTLSF SDPQRARELF  420
PSIPTSTFSS SSNVNFNSKN EPSMLNSQFY WSARDTRADS CAASTNAVIV EKKQEQNSGG  480
CRLFGIDICS AEEEVLPVVT APALGYDQTA ASLELNSDKL SQPSDVNNSD APGASSERSP  540
PESQSRQVRS CTKVIMQGMA VGRAVDLTKL SGYSDLCHKL EEMFDIQGEL GSTLKKWRVI  600
YTDDEDDMML VGDDPWNEFC DMVKRIYIYT YEEAKKLTSK SNLPGSSDTS KLSDVNSQSE  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053641357Auxin response factor 1
4ldw_A0.053641357Auxin response factor 1
4ldw_B0.053641357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823850.10.0auxin response factor 9-like
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A2S3I6V40.0A0A2S3I6V4_9POAL; Auxin response factor
STRINGPavir.Gb01617.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]