PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00447.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 259aa    MW: 29267.6 Da    PI: 7.0796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00447.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.94.9e-1955115359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59 
                     Dg+ Wr YGqK++k++++pr Y+rC+++   +C++ k v+  +++dp + e+tY  eH+++
  Pahal.G00447.1  55 DGHFWREYGQKVIKDAPHPRLYFRCSYReerHCQASKLVQLvTHDDPPLYEVTYMYEHTCN 115
                     9**************************98899********7256789************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-2039115IPR003657WRKY domain
SuperFamilySSF1182901.05E-2046116IPR003657WRKY domain
SMARTSM007743.1E-2653116IPR003657WRKY domain
PROSITE profilePS5081115.59455117IPR003657WRKY domain
PfamPF031062.4E-2155114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MATPGLKRTK QQLNLQPYGQ GGISLSSLEP VPRNGRKRRK DKHTWIKHTL TPYFDGHFWR  60
EYGQKVIKDA PHPRLYFRCS YREERHCQAS KLVQLVTHDD PPLYEVTYMY EHTCNAAPVP  120
SPGVEAKDDE PPASGGGLVL RFGFSGGGHH HHHRDARVQL QEERPQFHRS PRPSLMMTNP  180
PDYSNNSQQR AFPSTVPPPP TMSSWSSPSF PIIESSSSAT PPWTDDDDDI LTWDWDSSTY  240
DLLADGHLQL GDHVQLPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-14551141068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310PGLKRTKQ
23540RKRRKD
33541RKRRKDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825326.11e-165probable WRKY transcription factor 62
TrEMBLA0A2T7CVU01e-144A0A2T7CVU0_9POAL; Uncharacterized protein
STRINGSi012735m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.16e-18WRKY DNA-binding protein 66