PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00679.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 343aa MW: 37461.9 Da PI: 6.1841

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00679.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.8	1.1e-26	48	134	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t.sessstcpyfdqle 86 W ++e+l+Li++rrem+ +++++k +k+lWe++s+ mr++gf rsp++C++kw+nl k++kk + +++++ + + +++y+++++ Pahal.G00679.1 48 WVREETLCLIALRREMDAHFNTSKFNKHLWEAISAWMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARSGgAgGNGNAKMAYYKEID 134 *******************************************************************99952355667899999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.2	40	104	IPR017877	Myb-like domain
SMART	SM00717	0.0024	44	106	IPR001005	SANT/Myb domain
CDD	cd12203	2.61E-25	46	111	No hit	No description
Pfam	PF13837	1.0E-17	47	136	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-4	47	105	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLLSGPPAAP TPPLLLPESS GEDSGHDTSS RAAAAAAGSA PKRRAETWVR EETLCLIALR 60 REMDAHFNTS KFNKHLWEAI SAWMRDQGFD RSPTMCTDKW RNLLKEFKKA RSHARSGGAG 120 GNGNAKMAYY KEIDDLLKRR GKASGGGGGG CVGSGSVSGA RKSPTSNTKI ESYLQFTTDN 180 GFEDANIPFG PVEANGRSIL SIDDHLEDDK HPLPLTAADA VATNGVNPWN WRDTSTNGGD 240 NQGTFDGRVI LMKIEVVRTL DRDMPIGTYT LHLDDGVTIK LCDASRMQTP EDKMFYAEED 300 FRDFLARLGW TLLREYGGYR NVDSLDDLRP GVIYQGLRSL GD*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLLSGPPAAP TPPLLLPESS GEDSGHDTSS RAAAAAAGSA PKRRAETWVR EETLCLIALR  60
REMDAHFNTS KFNKHLWEAI SAWMRDQGFD RSPTMCTDKW RNLLKEFKKA RSHARSGGAG  120
GNGNAKMAYY KEIDDLLKRR GKASGGGGGG CVGSGSVSGA RKSPTSNTKI ESYLQFTTDN  180
GFEDANIPFG PVEANGRSIL SIDDHLEDDK HPLPLTAADA VATNGVNPWN WRDTSTNGGD  240
NQGTFDGRVI LMKIEVVRTL DRDMPIGTYT LHLDDGVTIK LCDASRMQTP EDKMFYAEED  300
FRDFLARLGW TLLREYGGYR NVDSLDDLRP GVIYQGLRSL GD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-38	42	132	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146488.1	0.0	uncharacterized LOC100280076
Swissprot	Q9FX53	1e-106	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A3L6PU84	0.0	A0A3L6PU84_PANMI; Trihelix transcription factor
STRING	GRMZM2G047370_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	4e-97	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pahal.G00679.1

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]