PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00819.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 419aa    MW: 44327.1 Da    PI: 9.972
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00819.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20187236255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Pahal.G00819.1 187 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 236
                     7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-33186245IPR001471AP2/ERF domain
CDDcd000183.32E-30187245No hitNo description
SuperFamilySSF541714.25E-22187245IPR016177DNA-binding domain
PROSITE profilePS5103224.711187244IPR001471AP2/ERF domain
SMARTSM003804.8E-38187250IPR001471AP2/ERF domain
PfamPF008472.1E-13187236IPR001471AP2/ERF domain
PRINTSPR003672.2E-11188199IPR001471AP2/ERF domain
PRINTSPR003672.2E-11210226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
LPRRRARGSE VQKLELSPTH ARIDRSSPSD GRRRRQIDRQ LTKVDPRKHG KRPLPADEEE  60
EEPPPPPPAK HEPLDVEEQY HVSQLQGATT FSGGGGSSSS PVGAGPSPEA YAQFYYSARA  120
DHDATAVASA LAHVIRASPD QLPPQAFYAA AAAAGATGHQ QAAPHHPGGH AGAAAAAEEE  180
QAGRRRHYRG VRQRPWGKWA AEIRDPKKAA RVWLGTFDTA EDAAIAYDEA ALRFKGTKAK  240
LNFPERVQGR TDLGFLVTRG IPDRHHHHQH QGAVTLAAMP PPHRHQHQTV VPYPDLMQYA  300
QLLQGGRGGG GGDHHAEAAA AHQAAQAQLM MMARGGGGVN LPFGAASFSP SPSPSSAPQI  360
LDFSTQQLIR PGPPSPAAAM SSGAAPSTPS TSSTTTASSP GGGAWPYGGE HHRNKKDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26186248467ATERF1
3gcc_A4e-26186248467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304311GGRGGGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-145EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825288.10.0uncharacterized protein LOC112900671
TrEMBLA0A3L6PS870.0A0A3L6PS87_PANMI; AT-rich interactive domain-containing protein 1A-like isoform X1
STRINGSi010289m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-22related to AP2 6l