PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00886.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1014aa    MW: 113477 Da    PI: 6.4895
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00886.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.14.7e-55121273117
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwlk++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np fqr
  Pahal.G00886.1  12 EEaRTRWLKPSEVYYILQNHERFPITHEAPRKPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQR 106
                     5569******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylev 117
                     rc+w+Le ++e+ivlv+y+ev
  Pahal.G00886.1 107 RCFWMLEPAYEHIVLVQYREV 127
                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.6817133IPR005559CG-1 DNA-binding domain
SMARTSM010768.6E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4713126IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.36E-15436520IPR014756Immunoglobulin E-set
PfamPF018331.3E-7437507IPR002909IPT domain
Gene3DG3DSA:2.60.40.106.0E-7437524IPR013783Immunoglobulin-like fold
SuperFamilySSF484031.71E-16463512IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-16632727IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-16632729IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.937634726IPR020683Ankyrin repeat-containing domain
CDDcd002042.82E-9639726No hitNo description
PfamPF127961.6E-6650727IPR020683Ankyrin repeat-containing domain
SMARTSM002489.7E-5667696IPR002110Ankyrin repeat
PROSITE profilePS5008811.301667699IPR002110Ankyrin repeat
SMARTSM002484600706735IPR002110Ankyrin repeat
SMARTSM0001527787809IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602788817IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712846875IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.58E-6846893IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001517847867IPR000048IQ motif, EF-hand binding site
PfamPF006120.015848866IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731869897IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-5870890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1014 aa     Download sequence    Send to blast
MSQSFDINVL REEARTRWLK PSEVYYILQN HERFPITHEA PRKPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSKLSNG PPESLSSLGY PHAIYGNQYL SSTSGTSEGS ESHQSYSNLS  180
SVTEVSSYSG NKEYNKDGGS LLSIPELGQT CLEQTTEVYQ ADNDNSKNKS GLNVALKKIA  240
EQLSLGDDED DYIYTNQVQP LGFATNIEAT DKKDDNQIKQ IQPEGAQKGL GRNIAPSWED  300
VLHSSSGLPT PSIYQSDVQY QQNSEYHPPG SLDSSDLRIQ LSAAKRFLLG PEASIDSPSS  360
NFILRNKKNG GTDILSAHES RLESSLNPDW KTKAPLTFQS NSQGSEITEL LFDRGQLEPY  420
SRADTRLTLG QIKQFNIREI SPEWAFSYEI TKVIITGDFL FDSSNLCWAV MFGDSEVPAE  480
IVQPGVLRCH TPLHSSGKLR VCITSGNREV CSEFKEFEFR SKPTSSGSSD LAPSSRSLKS  540
SEELLFLAKF VRMLLLENGS SEVPDSDPQS GQCPKLRMNE ELWDRLIHEL NLGCENPLST  600
VDQIMEELLK SRLQRWLSVK LKGFNGTSSS LSKHDQGIIH LISALGYEWA LSSVLSAGVG  660
LNFRDSNGWT ALHWAAYFGR EKMVAALLAA GASATAVTDP TAQDPVGKTA AFLASERGHT  720
GLAGYLSEVS LTSYLASLTI EESDVSKGSA EIEAERAVES ISQRSAQLHG GTEDELSMKD  780
SLAAVRNAAQ AAARIQNAFR AFSFRKRQQK TARLRDEYGM TQEDIDELAA ASRLYHQAHA  840
SSGQFYDKAA VSIQKKYKGW KGRKHFLNMR RNAVKIQAHV RGHQVRKKYR TIVSTVSVLE  900
KVILRWRRKG HGLRGFRAEQ QPMVGAVEED DEEDDDFDDD EAVKVFRRQK VDQAVKEAVS  960
RVLSMVDSTE ARMQYRRMLE EFRQASAELG GSQEVTSIFD SDLEILGINN FML*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823459.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A2S3I6190.0A0A2S3I619_9POAL; Uncharacterized protein
STRINGPavir.Ga01952.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-145Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains