PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00898.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 166aa MW: 17197.7 Da PI: 8.5168

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00898.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.2	9.4e-11	55	134	7	92
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +s+v+ ++v+p++ a + + t + +grsW +++ +++++ l++GW++F+ + gL+ gD +v++l++ ++ Pahal.G00898.1 55 KSHVHPPFQVVVPRSLAPFLPAA-TAP--AT-LSWRGRSWGMRF--TGGRQIQRLEAGWRGFALDAGLRLGDACVLELVDGGPERV 134 56666666666666666444222.222..22.34689*****..9999999**********************987544433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.16E-13	46	133	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-12	46	142	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.73E-8	47	135	No hit	No description
PROSITE profile	PS50863	10.532	49	144	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-8	52	135	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MASDAALKGK SAASSSAEQS GEAAAAAADG PDDHQLQPGI LPLLGKPYFA CIMCKSHVHP 60 PFQVVVPRSL APFLPAATAP ATLSWRGRSW GMRFTGGRQI QRLEAGWRGF ALDAGLRLGD 120 ACVLELVDGG PERVVFRAQV LRADIPAAIR GRAGGDTSAS PILID*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825273.1	1e-114	B3 domain-containing protein Os04g0386900-like
Swissprot	Q7XLP4	1e-69	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A2S3I5Y2	1e-113	A0A2S3I5Y2_9POAL; Uncharacterized protein
STRING	Pavir.Gb01948.1.p	8e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Link Out ? help Back to Top
Phytozome	Pahal.G00898.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]