PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01169.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 381aa    MW: 42780.8 Da    PI: 5.9407
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01169.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like58.81.1e-18167217455
         G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     ++W++ LH++F++a+e L G+  A P++i  lm+v+g+ ++h++SHLQkYR 
  Pahal.G01169.1 167 ICWNEYLHRKFLRALEIL-GEGAASPRNIEILMNVEGVNRKHIASHLQKYRK 217
                     79****************.9*******************************6 PP
2Response_reg46.71.7e-16151221107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     v++vd+++  ++  r++l   +y ++++ +++ +ale l+ +   +Dl l+ + m +++G+++l     +++++++i+++ + +++++++++k+G
  Pahal.G01169.1  15 VIVVDEDKHHANSTRSMLCTLNY-HATAYTSPIKALEFLEGHAqeVDLALVAVHMEELHGFQFLDIVSDAHKNVQVIMMSNETTMDTMKRCIKLG 108
                     799********************.***************776667**********************99999*********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a+  + Kp+d   +
  Pahal.G01169.1 109 ARFLVNKPIDAHTI 122
                     *********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.3E-2111132No hitNo description
SuperFamilySSF521723.98E-2011129IPR011006CheY-like superfamily
SMARTSM004484.3E-513126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.84814130IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.4E-1515122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.48E-1116119No hitNo description
SuperFamilySSF466899.86E-13162220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-17162218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-16167218IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDERAKLCPA NGLSVIVVDE DKHHANSTRS MLCTLNYHAT AYTSPIKALE FLEGHAQEVD  60
LALVAVHMEE LHGFQFLDIV SDAHKNVQVI MMSNETTMDT MKRCIKLGAR FLVNKPIDAH  120
TINNLWQHLD LKDYSRMDYI KNLLQGNGEA HDLSYLKENT KTKKGYICWN EYLHRKFLRA  180
LEILGEGAAS PRNIEILMNV EGVNRKHIAS HLQKYRKRME AGKQNSALDA KKCRHRASTS  240
KSAKRQEGPN TSLNSLDIQQ EEMTADEDMP HAKTGSFSDN NNAHAAMQRS IQFGTIYDES  300
EYFYYSSGDE ATEDGVDMME DDGTSASSFT AQVSTAETFS AEGTKDILNN NSSKKQDRHG  360
DKVGKAIKLV DYSESEDDEI *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825245.10.0two-component response regulator ORR29-like
TrEMBLA0A2T7CTM00.0A0A2T7CTM0_9POAL; Uncharacterized protein
STRINGPavir.Gb02032.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-23response regulator 2