PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01206.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ARR-B

Protein Properties

Length: 323aa MW: 36838.8 Da PI: 5.9538

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01206.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	47.7	3.3e-15	131	181	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +l Wtp L ++F++a+e LG e AtPk i +m+v+++ +++v HLQk+R Pahal.G01206.1 131 QLMWTPFLQQKFLQALELLG--EAATPKMIQLIMNVDSIDRNQVSAHLQKHRK 181 789**************4..67*************************96 PP
2	Response_reg	26.8	2.6e-10	3	83	29	107
ESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS Response_reg 29 addgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107 ++++ +al+ lk+++ +D l+ ++m +m+G+e+l re +++l++i+++++ + +++++ +++Ga+ + Kp d + + Pahal.G01206.1 3 FTSPIKALKFLKDHKeyIDFALVVVNMKEMHGFEFLDISREFHKNLQVIMMSDEITWPTMKRSVELGARFLIKKPHDAKTI 83 56677899999888889*****************9889999******************************776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50110	17.865	1	91	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	8.67E-7	3	90	No hit	No description
Pfam	PF00072	3.9E-8	3	83	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	8.11E-12	3	93	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	7.4E-13	3	98	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-14	127	185	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-9	130	185	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-15	131	182	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAFTSPIKAL KFLKDHKEYI DFALVVVNMK EMHGFEFLDI SREFHKNLQV IMMSDEITWP 60 TMKRSVELGA RFLIKKPHDA KTINDLWQHL DTRNRREKIE DIFQGIEGKK DDVFKSDNEF 120 REGANKQKVT QLMWTPFLQQ KFLQALELLG EAATPKMIQL IMNVDSIDRN QVSAHLQKHR 180 KKIEKELRNS SAKKCSNGAS SSQPNTSQYD PEIQSVDTWD EDMSWDQTES TNDIQGENNM 240 IEAMRRALRL GTVFDESQLP NDPSGKQASK GEVDMMGDGN ISETQNADNA KGAMGKCDSD 300 KQVPSGIAQG RVVMLVTYSD LKM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825246.1	1e-156	two-component response regulator ORR29-like
TrEMBL	A0A2T8IBT2	0.0	A0A2T8IBT2_9POAL; Uncharacterized protein
STRING	Pavir.Gb02311.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5920	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	6e-16	response regulator 10

Link Out ? help Back to Top
Phytozome	Pahal.G01206.1