PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01212.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 293aa    MW: 32232 Da    PI: 8.6521
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01212.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-10231051299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++rl++p + ae++g  k       +  + g     +W v l   + +g+ +l++GW eF+ a+g+ +g  + +++    ++ l+vk+f++
  Pahal.G01212.1  23 CEDRLRIPDELAEDIGAGK-----ALVVGPCGvksrAVWPVGL--GRDGGGAFLGRGWPEFAAAHGVGAGWHLALRHR--GRGVLTVKAFDN 105
                     5689********9997553.....4455555555569******..9******************************64..567779999987 PP
2B358.31.4e-18199281186
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++k+ ++ ++l+++ l+lp +f++++g+ +++++tl+   +s rsW+v +    ++ +  l++GWk+F+ +n++kegD+++F  ++
  Pahal.G01212.1 199 WIKKQINTYTLEND-LTLPLTFCNAIGLREACTITLKTSLSSTRSWQVHV--LPYKHASNLGSGWKRFCWDNEIKEGDTCTFNIIE 281
                     6899999*****99.**************99988888777899*******..88888888**********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.23412106IPR003340B3 DNA binding domain
SMARTSM010190.001214106IPR003340B3 DNA binding domain
CDDcd100171.31E-816104No hitNo description
SuperFamilySSF1019361.69E-1217108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1217108IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-824105IPR003340B3 DNA binding domain
PROSITE profilePS508637.232123172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-7123174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-7124174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-18192290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18194290IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.801198292IPR003340B3 DNA binding domain
PfamPF023622.2E-14200281IPR003340B3 DNA binding domain
SMARTSM010192.0E-4200292IPR003340B3 DNA binding domain
CDDcd100171.19E-9213277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASSANHGGG AAKQLRVLLP FSCEDRLRIP DELAEDIGAG KALVVGPCGV KSRAVWPVGL  60
GRDGGGAFLG RGWPEFAAAH GVGAGWHLAL RHRGRGVLTV KAFDNSCCIR DLGAKQPAAT  120
VNSIKLEMDQ SDVFFAGGWP QFLAFHGITE SNALLLRYES NMVFTVKVFE PYGCQRKPKH  180
KDNIMQQSEQ EIKIGQPSWI KKQINTYTLE NDLTLPLTFC NAIGLREACT ITLKTSLSST  240
RSWQVHVLPY KHASNLGSGW KRFCWDNEIK EGDTCTFNII ETTLWHVVIV HR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825229.11e-130putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS752e-57Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A368RU441e-118A0A368RU44_SETIT; Uncharacterized protein
STRINGSi012375m5e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.15e-08B3 family protein