PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01213.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 275aa    MW: 31702.8 Da    PI: 9.9732
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01213.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.3e-15161234983
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     ++++++ l l   f++++g+++++ +tl+   +s +sW+v     ++ g+y l+ GW++F+k+ +Lk gD+++F 
  Pahal.G01213.2 161 NANTLRELALQTAFCDTIGLQEPCIITLKTSMSSTKSWQVHA-LPRRNGSYRLRPGWSRFCKESDLKLGDVCTFD 234
                     445556699************99988888888999******9.4555568************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.292185IPR003340B3 DNA binding domain
SMARTSM010190.079185IPR003340B3 DNA binding domain
CDDcd100173.46E-7282No hitNo description
SuperFamilySSF1019362.75E-13386IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-12386IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-14152247IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.757153249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-15154247IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.082156246IPR003340B3 DNA binding domain
PfamPF023621.3E-11161235IPR003340B3 DNA binding domain
CDDcd100174.23E-7161233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKKMLIPAKF MQQYIPKEHL NNRTAIIFGP LGKVPHIEIE MNQSDVFFSG GWSQFLVLHD  60
ITESNALLLR YEGNMVFTVK VFEPDGYQRE SKTKDIRMQQ NIEEKQEAPS ISIQKHYKND  120
LSSNDGVKKP KGPVMRLTKA PFWIKSVFEV GPSSWIKKQV NANTLRELAL QTAFCDTIGL  180
QEPCIITLKT SMSSTKSWQV HALPRRNGSY RLRPGWSRFC KESDLKLGDV CTFDIVEITL  240
WLVDVTRCKE KMNQFCYQEK PKRKKERSSG QLHI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825040.11e-112putative B3 domain-containing protein Os04g0347400 isoform X2
RefseqXP_025825228.11e-113putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2S3I5V70.0A0A2S3I5V7_9POAL; Uncharacterized protein
STRINGPavir.Ga02463.1.p1e-162(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.13e-09VERDANDI