PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01216.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 528aa    MW: 59108.1 Da    PI: 9.3175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01216.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-111422241198
                     HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++   + +p kf+++h  ++++++ + ++  ++g+++++kl  +  ++ +++t+GW++F   +++ e   ++ +++g++ f  +vkvf 
  Pahal.G01216.1 142 ME--KMLIPAKFVQQHiPKEHRNNHMAIVLGPHGKVYNIKL--EADRSDMFFTGGWSQFMVFHDITESNALLVRYEGSMVF--TVKVFG 224
                     33..389*********9666667789999************..8888899**************************99999..888885 PP
2B357.72.1e-18283367186
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++k+ ++ ++l+++ l l k f++++g+ +++++tl++ +++g rsW v    +k+s +y+l +GW++F+++n+LkegD+++F +++
  Pahal.G01216.1 283 WIKKQINTNTLEKH-LALAKAFCDAIGLWEPCTITLRVSTTDGtRSWLVHGLPCKTS-SYLLVQGWRQFCQENHLKEGDTCTFNVIE 367
                     67888999999999.*************************9999*******545554.6************************9765 PP
3B3512.5e-16429511186
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++k+++++ + +s+ l lp  f+e++g+ +++ +tl+  ++s +sW+ +l  + +++ + l +GWk+F+ +ng+++gD+++ + ++
  Pahal.G01216.1 429 WIKKEINACTIESH-LNLPLAFCEAIGLRQRCMITLKTSTSSTKSWQARL--NVYQNCCQLVGGWKSFCLDNGIRVGDVCTMQIIE 511
                     67888999999999.*****************99999999999*******..6666666699*******************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.08913104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-823104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-823106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.06454104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-15129226IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.264130226IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-16130227IPR015300DNA-binding pseudobarrel domain
CDDcd100179.22E-13131223No hitNo description
SMARTSM010191.2E-8133226IPR003340B3 DNA binding domain
PfamPF023626.6E-9141223IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-16277378IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-18278378IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.687282379IPR003340B3 DNA binding domain
SMARTSM010190.0023284380IPR003340B3 DNA binding domain
PfamPF023621.5E-13285367IPR003340B3 DNA binding domain
CDDcd100174.51E-9294363No hitNo description
SuperFamilySSF1019361.88E-16425522IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-7430523IPR003340B3 DNA binding domain
PfamPF023621.8E-12431511IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-17432522IPR015300DNA-binding pseudobarrel domain
CDDcd100176.86E-10439513No hitNo description
PROSITE profilePS5086310.532443523IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MASSGDHVAA AKHLRVLLPF TCDSLRVPDE LAEDIGAGEA LVVGPLGSKG KVFWRVEVGR  60
DGDGAFLGRG WPELADACGV DAGWLLVLRH RGRGVLTVKA FDDTRCLSDL GAPAPPPVEA  120
AVSGKATARK PQFIIVLPTD FMEKMLIPAK FVQQHIPKEH RNNHMAIVLG PHGKVYNIKL  180
EADRSDMFFT GGWSQFMVFH DITESNALLV RYEGSMVFTV KVFGSDGFQR YSKQKENKAQ  240
QRSTLPHSEK LQKAPSVSIQ NRKRKNKTSL QRNSIYKIGP PSWIKKQINT NTLEKHLALA  300
KAFCDAIGLW EPCTITLRVS TTDGTRSWLV HGLPCKTSSY LLVQGWRQFC QENHLKEGDT  360
CTFNVIETTL WNVLITCHEE KMNQFCYQET PKSKKDKSST DGQKMIQRSM NYLNKGRTKS  420
VFEIGPPAWI KKEINACTIE SHLNLPLAFC EAIGLRQRCM ITLKTSTSST KSWQARLNVY  480
QNCCQLVGGW KSFCLDNGIR VGDVCTMQII ETTLWNVTVD RREDSTR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2S3I5M40.0A0A2S3I5M4_9POAL; Uncharacterized protein
STRINGPavir.Gb02050.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.16e-15B3 family protein