PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01219.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 199aa    MW: 22440.9 Da    PI: 9.773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01219.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.3e-134564398
                    S-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 43 grsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +sW+v    r + ++ y+++ GWk+F+++n LkegD+ +F+++g++    +v ++r
  Pahal.G01219.1  4 TESWQVHG--RTSENSsYLISHGWKRFCQENSLKEGDISTFYVVGTT-L-WHVVIIR 56
                    689*****..5554445*************************88732.2.3555555 PP
2B354.52.1e-17110188787
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     + ++++ + ++lp  f+e+ g+ +++++tl+   +s  sW+ ++   k+ + ++ ++GWk+F+++n++kegD+++F  +g+
  Pahal.G01219.1 110 NTSTME-NVFSLPLAFCEALGLREPCTITLKTSMSSTTSWQARVVPYKY-CNHLGGSGWKRFCQENRIKEGDVCTFNIVGT 188
                     444444.569*************99988888778999*******54555.57899**********************8773 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.647158IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-12456IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-11557IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-10554IPR003340B3 DNA binding domain
CDDcd100176.33E-8557No hitNo description
Gene3DG3DSA:2.40.330.105.1E-1999197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1899197IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.35103198IPR003340B3 DNA binding domain
SMARTSM010190.0015105198IPR003340B3 DNA binding domain
PfamPF023621.2E-14113193IPR003340B3 DNA binding domain
CDDcd100176.09E-11118183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDSTESWQVH GRTSENSSYL ISHGWKRFCQ ENSLKEGDIS TFYVVGTTLW HVVIIRKPLL  60
RPVASARLTN IFQVVKNRRG QMVPLTPNKA SSKEKCAFEI GPPAWVKEIN TSTMENVFSL  120
PLAFCEALGL REPCTITLKT SMSSTTSWQA RVVPYKYCNH LGGSGWKRFC QENRIKEGDV  180
CTFNIVGTKL WHVVVARQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826051.13e-63putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2T8IBN62e-81A0A2T8IBN6_9POAL; Uncharacterized protein
STRINGPavir.Gb02050.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.23e-10B3 family protein