PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01223.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 443aa    MW: 49821.7 Da    PI: 10.5761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01223.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43.1e-19216307196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ++k+++++++l+++ l+l+  f++ +g+ +++  +++l++   s rsW+v+++   k ++y +++GWk+F+++n+Lk+gD+++F +++  ++  +
  Pahal.G01223.1 216 WIKKEINKNTLEKH-LSLSAAFCNVIGLREPC--MIMLKNsmNSTRSWQVRCN-PYKHCSYQIGSGWKRFCQDNRLKQGDVCTFNVIE--TTLWH 304
                     78999********9.********999*99777..78888844566*******3.334467************************9765..33345 PP

                     EEE CS
              B3  94 vkv 96 
                     v +
  Pahal.G01223.1 305 VDI 307
                     555 PP
2B339.97.4e-13360431186
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++k++++ +++ +g l+l   f++++g  k++++tl+  + s +sW++ l             GWk+F+++n+Lk+gD+++F +++
  Pahal.G01223.1 360 WIKKEINTSTHDNG-LSLAPAFCDAIGFRKPCTITLKSSTNSTKSWQIGL-------------GWKKFCQENRLKVGDICTFNVIK 431
                     67889888888888.***********99999987777777888*******.............*******************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.091136IPR003340B3 DNA binding domain
SMARTSM010191.7E-461140IPR003340B3 DNA binding domain
CDDcd100171.19E-769137No hitNo description
Gene3DG3DSA:2.40.330.103.2E-1070142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1276142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.51681140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19215310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-17217309IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-5217311IPR003340B3 DNA binding domain
PfamPF023622.1E-15217300IPR003340B3 DNA binding domain
CDDcd100172.41E-11227295No hitNo description
PROSITE profilePS5086311.815248311IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14354441IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-13355441IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-8361427No hitNo description
SMARTSM010190.012361442IPR003340B3 DNA binding domain
PfamPF023623.6E-9362438IPR003340B3 DNA binding domain
PROSITE profilePS508639.093409442IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MWPEFAALHG LTGGGWFMVL RHHGGGVLTV KAFDASCCLW EFGAPAAATR ISKVASHKPQ  60
FISLLQRDNF TEKHLNNQIA VVVSPLGKFW RIGLEVNQSG MSPAGGWSEF LSFHGIIEGN  120
VLLLKYQSNM VFTVKVFGPD GCQMQSKRKD TRIQQTPTLP DIEKQRESLS ASAKKRKSKN  180
ERSSGERLKR PKGSMTSLDK ASLRRKSVYE IGPQSWIKKE INKNTLEKHL SLSAAFCNVI  240
GLREPCMIML KNSMNSTRSW QVRCNPYKHC SYQIGSGWKR FCQDNRLKQG DVCTFNVIET  300
TLWHVDIMRA RVTLFSSMKS KCKNNSSSYE GQKWPKGSMN SLSKASLRPR CAYEIGPPSW  360
IKKEINTSTH DNGLSLAPAF CDAIGFRKPC TITLKSSTNS TKSWQIGLGW KKFCQENRLK  420
VGDICTFNVI KTTLWHVVIA RR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.21e-156putative B3 domain-containing protein Os04g0346900
TrEMBLA0A2T8IBP20.0A0A2T8IBP2_9POAL; Uncharacterized protein
STRINGPavir.Gb02050.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-07B3 family protein