PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01231.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 580aa    MW: 64582.6 Da    PI: 9.6265
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01231.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-1413102399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     kvl+ps  ++s++l+++ + +++ +g      t  l ++ g++W+v++   +  g+ +l++GW eF+ a+g  +g f+vF+++  s++ l++k+f
  Pahal.G01231.1  13 KVLLPS--STSHNLRISDELTRHWDGGAG--GTALLVSPLGKVWRVQV--ARDAGGAFLGRGWPEFAAAHGFGAGCFLVFRHEA-SGGLLTFKAF 100
                     666444..4455699****9966666643..489**************..*******************************765.8888999999 PP

                     -S CS
              B3  98 rk 99 
                     ++
  Pahal.G01231.1 101 DT 102
                     86 PP
2B333.86.2e-11130223198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f++vl+p+++ k g   +p kf++++  ++++ +s+  +l ++  +   +++  +++sg+ ++++GW++F  ++g+ e D+++++++g++ f  +
  Pahal.G01231.1 130 FISVLLPPSMEKMG---IPPKFVKNYisELETGSSI-SILLSPLCKFCLITVEKDQSSGTLFFSGGWSRFLASHGIMEYDVLLLRYEGNMVF--T 218
                     67778888888765...******9999777666654.45567777777777777999999*******************************9..8 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     vkvf 
  Pahal.G01231.1 219 VKVFG 223
                     88875 PP
3B349.76.5e-16309395286
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      k +++++ l+++ l++  +f++++g+ +++  ++tl+++       rsW+v++ +   ++sg+  lt+GW++F+ +n++k+gD+++F  ++
  Pahal.G01231.1 309 MKREISAYILSNH-LTIAWTFCKAIGLCSTS--EVTLRTTADedhglRSWQVRIMVyeIRHSGE--LTRGWRRFCADNRIKAGDICTFNIIE 395
                     6778888999998.***********999766..5666665555689********7756666666..9*********************9765 PP
4B357.91.8e-18485568487
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       ++++ l++ +l++p +f++++++  ++  ++tl+++ +     rsW+v++    ++++ +lt+GW++F+ +n++kegD+++F  +++
  Pahal.G01231.1 485 RKISAYILSK-ILYVPGNFCKAIELRRTS--EITLRTTANedhglRSWQVRF--LVYGKSNMLTRGWRGFCADNRIKEGDICTFNIIKT 568
                     5555555555.6***********999666..5666665555689********..78888889**********************97763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.7439103IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1510105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1510105IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-1011103IPR003340B3 DNA binding domain
CDDcd100176.67E-1313101No hitNo description
PfamPF023624.0E-1213102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-14125227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-15125229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.501127225IPR003340B3 DNA binding domain
CDDcd100171.26E-11128222No hitNo description
SMARTSM010191.4E-8130225IPR003340B3 DNA binding domain
PfamPF023622.3E-8130222IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-15303405IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-17305405IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.017309407IPR003340B3 DNA binding domain
PfamPF023625.6E-12309395IPR003340B3 DNA binding domain
CDDcd100174.70E-10328391No hitNo description
PROSITE profilePS5086310.546353407IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-18478577IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-8483579IPR003340B3 DNA binding domain
PfamPF023621.5E-15483567IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19486577IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-13493563No hitNo description
PROSITE profilePS5086312.351496579IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MGSSSGAISR HLKVLLPSST SHNLRISDEL TRHWDGGAGG TALLVSPLGK VWRVQVARDA  60
GGAFLGRGWP EFAAAHGFGA GCFLVFRHEA SGGLLTFKAF DTTCCLREFS RPISAANHGG  120
SGGGSHRPQF ISVLLPPSME KMGIPPKFVK NYISELETGS SISILLSPLC KFCLITVEKD  180
QSSGTLFFSG GWSRFLASHG IMEYDVLLLR YEGNMVFTVK VFGPDGCQKG CKDQGTSNKQ  240
QEQSDETTFS DTKMEEEDAP SSSRKRKRME KKPGGEDNSK RPRSPTTSLN KAPLSMNRPV  300
YEIGPPSWMK REISAYILSN HLTIAWTFCK AIGLCSTSEV TLRTTADEDH GLRSWQVRIM  360
VYEIRHSGEL TRGWRRFCAD NRIKAGDICT FNIIETTLWH VDITRHCKDQ GTSSKELEQS  420
DKTTFSDAKT EKEDVPSSSR KRKCKDKKPD GEENSKRPKS PTTSLNKAPS PSIVYEIGPP  480
SWLKRKISAY ILSKILYVPG NFCKAIELRR TSEITLRTTA NEDHGLRSWQ VRFLVYGKSN  540
MLTRGWRGFC ADNRIKEGDI CTFNIIKTTL WHVDIMRHG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6PWP90.0A0A3L6PWP9_PANMI; Prolyl 4-hydroxylase 1
STRINGPavir.Ga02236.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-15B3 family protein