PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01340.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 203aa MW: 20922.8 Da PI: 10.5997

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01340.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.3	2.8e-34	50	147	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg............. 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c + + s ss + s+ Pahal.G01340.1 50 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCsS-APSTSSPA---SAahpllgkrpredh 140 89*******************************************************99999444521.22222222...111224444444444 PP TCP 89 ......k 89 + Pahal.G01340.1 141 epapapA 147 3333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-30	49	143	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	49	103	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MASRDAATFQ VYRPMPAPTP APAPMSLAAA APASDVAAPA LKKASPGAGK DRHSKVNGRG 60 RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFSCSSAPS 120 TSSPASAAHP LLGKRPREDH EPAPAPAPFW ATLQARPVAW GLSPAQEAAA QAYASVAAQQ 180 GHHLNLLSVL SGAARPSEEE SR*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727696	1e-105	KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826214.1	1e-141	transcription factor PCF1-like
TrEMBL	A0A2S3I8K6	1e-139	A0A2S3I8K6_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CXN8	1e-139	A0A2T7CXN8_9POAL; Uncharacterized protein
STRING	Si011076m	2e-93	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-36	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01340.1