PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01361.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 505aa    MW: 53321.4 Da    PI: 10.4221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01361.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-18281331256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae Aa a+++ + kl+ge
  Pahal.G01361.1 281 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEAAAMAYDREAFKLRGE 331
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.12E-30280339No hitNo description
Gene3DG3DSA:3.30.730.106.9E-31281339IPR001471AP2/ERF domain
PROSITE profilePS5103222.985281338IPR001471AP2/ERF domain
SMARTSM003801.6E-36281344IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22281340IPR016177DNA-binding domain
PRINTSPR003676.3E-10282293IPR001471AP2/ERF domain
PfamPF008478.5E-12282331IPR001471AP2/ERF domain
PRINTSPR003676.3E-10304320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MPARQAAPVA PPSFRREFVR PSVLQVGLRI SFFTRFLSSI YCRSGRRAAR RWAFGCARAS  60
SHRCVRGSCC LYRGCLGMDA SSASGESGGG GGAGGGRGGR RWKGKGVTPI QPRGQLAPVM  120
EDASAASLRP LKKIGRGPDR FQRSASSLST SSSAPPSPCA SAASTAAAAS PPSARRIFPF  180
AYETSALAGG AAPRLQLLPW QHSSASQPQR APPQSQQMIS FGAPPQYQAQ FLLPEGSPQQ  240
QHLLRYWSEA LNLSPRGGQA AAVLPSLYQH LLRAPPPPQK LYRGVRQRHW GKWVAEIRLP  300
RNRTRLWLGT FDSAEAAAMA YDREAFKLRG ENARLNFPDR FFGKGQAGGS GRTSASSTAA  360
QTAGAGSGSS SSSSPPQTPD EASGQQTPPP HAEGSTDKQP QPPVDTSSSQ QGGSPGDTTM  420
PSVSAEMIHA PVAHGSEWGP ADEAWFNVWG PGSSFWDYDM DNTPGLFLHG RFAGDEAGME  480
QSSAQGTAAT ATGTDMSCDH VPTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18280340465ATERF1
3gcc_A4e-18280340465ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824928.10.0ethylene-responsive transcription factor ERF054-like isoform X2
TrEMBLA0A2S3I9S30.0A0A2S3I9S3_9POAL; Uncharacterized protein
STRINGPavir.Gb00710.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-27ERF family protein