PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01422.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 275aa    MW: 28790 Da    PI: 7.9208
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01422.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY179.51.9e-55242276170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.............................. 70 
                       eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl+     +aa  + +  +                                 
  Pahal.G01422.1  24 EQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPTAAAANNQLPFGGGggqqqallsptsphglldemtmplqapslp 118
                     679*******************************************999665555554444433344678999999****777777776666544 PP

           YABBY  71 .......lleelkveeenlksnvekeesastsvssekl.......................senedeevprvppvirPPekrqrvPsaynrfike 135
                                                  st +s+++                          +e +++p+   +    +krqrvPsaynrfik+
  Pahal.G01422.1 119 saepasaC--------------------MSTLTSMNNScgggnnassvmsmaapppppvkpAPQEPQQLPKSV-ASGNKQKRQRVPSAYNRFIKD 192
                     32222221....................222222222233333333333446777776554445555666533.456679*************** PP

           YABBY 136 eiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     eiqrikasnPdi+hreafsaaaknWahfP+ihfgl
  Pahal.G01422.1 193 EIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 227
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-6424227IPR006780YABBY protein
SuperFamilySSF470952.09E-7168220IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.4E-4178219IPR009071High mobility group box domain
CDDcd000848.66E-5181217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMSSVPVPET FALDQHLAPQ QPAEQEQLCY VHCKCCDTIL AVGVPCSSLF KTVTVRCGHC  60
ANLLSVNLRG LLLPTAAAAN NQLPFGGGGG QQQALLSPTS PHGLLDEMTM PLQAPSLPSA  120
EPASACMSTL TSMNNSCGGG NNASSVMSMA APPPPPVKPA PQEPQQLPKS VASGNKQKRQ  180
RVPSAYNRFI KDEIQRIKAS NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGMKKTSIQS  240
QEGGECMLFK DGLYVTAAAA AAAAAASTMG IAPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180KQKRQR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825940.11e-175protein YABBY 5-like
SwissprotQ01JG21e-114YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-114YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A2S3I8S70.0A0A2S3I8S7_9POAL; Uncharacterized protein
STRINGPavir.Gb00743.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-38YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]