PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01667.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 125aa    MW: 13331.6 Da    PI: 8.3386
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01667.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS29.96.9e-10358156
            GRAS  1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56
                    lv+ L++cAeav+ +d + a al  +l+  a  +g+++qR+a++f+++La rlar 
  Pahal.G01667.1  3 LVQPLVACAEAVACHDYAHAMALRRELQVGAPVHGTAFQRVASCFVQGLADRLARA 58
                    5789**************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.5251124IPR005202Transcription factor GRAS
PfamPF035142.3E-7358IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MRLVQPLVAC AEAVACHDYA HAMALRRELQ VGAPVHGTAF QRVASCFVQG LADRLARAHA  60
PALGLASMAF YILPSCTGRD SARGQVLALV YELCSKCGEF SSQCHAVANR IHVKCDLRSN  120
ICSM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.16e-42DELLA protein RGL1-like
TrEMBLA0A2S3I5F52e-84A0A2S3I5F5_9POAL; Uncharacterized protein
STRINGSb03g043030.17e-41(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-06RGA-like protein 3