PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01745.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 581aa MW: 62741.4 Da PI: 4.4919

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01745.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.1	6.1e-11	21	63	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E +ll++a + + g+ W+ Ia+++ ++t +qc +++++ Pahal.G01745.3 21 NWTDQETLLLLEALQIFQGKEWDEIAEHVA-TKTKEQCMLYFLQ 63 8***************************.********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	18.983	17	69	IPR017884	SANT domain
SuperFamily	SSF46689	1.72E-10	18	69	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-10	18	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-7	20	62	IPR009057	Homeodomain-like
CDD	cd00167	1.61E-10	21	64	No hit	No description
Pfam	PF00249	7.0E-10	21	64	IPR001005	SANT/Myb domain
Pfam	PF16495	8.3E-22	477	558	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MSKADFILME YAEVPGSGGS NWTDQETLLL LEALQIFQGK EWDEIAEHVA TKTKEQCMLY 60 FLQMPIFNSF LDGEDFNETP QKITEQDSAE TGTLGVPEEM DVGDNAKGKE STDEKTYKKA 120 NANSSETGTK LADQSVSAKE NTMNLGDNDL VPSSIVDESN KSSLMDPANK KKSADADVSG 180 EHASNFVTDV LRSTFEAVGH FLGKDDLGSF AEAGNPVMAL AGFLASLVER DDAVTLCCSS 240 LRAISAISPA LQLATGHCFI LPDPPNNLKD LTSNYSPCTC GEYQGGADGT QNVNDTDKDS 300 SKREESALAL EKEDASQEHL ELSNTEESFV EGPKAEVKSN STKDSDNQTA KVGTSVASDK 360 MRDGCNTIPC SATSNNTNEP SSITSQEASA ASTNATTNRE RLEADKSSSK ELPDDDSPSQ 420 GKVEPKEIEH APMASSSIQQ HESNQTGSGN TEEPNSNKNI AAAAADPVIR LQRAAVTAIS 480 AAAVKAKFLV EQEEGHIRRL AELVIEKQFQ KMETKMSFLA EVENLVLRSR ELTEKMRKKL 540 MLERSAIIAS RMSAAASRTN QHRAPETRLP VALVRQLRHP *

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MSKADFILME YAEVPGSGGS NWTDQETLLL LEALQIFQGK EWDEIAEHVA TKTKEQCMLY  60
FLQMPIFNSF LDGEDFNETP QKITEQDSAE TGTLGVPEEM DVGDNAKGKE STDEKTYKKA  120
NANSSETGTK LADQSVSAKE NTMNLGDNDL VPSSIVDESN KSSLMDPANK KKSADADVSG  180
EHASNFVTDV LRSTFEAVGH FLGKDDLGSF AEAGNPVMAL AGFLASLVER DDAVTLCCSS  240
LRAISAISPA LQLATGHCFI LPDPPNNLKD LTSNYSPCTC GEYQGGADGT QNVNDTDKDS  300
SKREESALAL EKEDASQEHL ELSNTEESFV EGPKAEVKSN STKDSDNQTA KVGTSVASDK  360
MRDGCNTIPC SATSNNTNEP SSITSQEASA ASTNATTNRE RLEADKSSSK ELPDDDSPSQ  420
GKVEPKEIEH APMASSSIQQ HESNQTGSGN TEEPNSNKNI AAAAADPVIR LQRAAVTAIS  480
AAAVKAKFLV EQEEGHIRRL AELVIEKQFQ KMETKMSFLA EVENLVLRSR ELTEKMRKKL  540
MLERSAIIAS RMSAAASRTN QHRAPETRLP VALVRQLRHP *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825804.1	0.0	SWI/SNF complex subunit SWI3D-like isoform X2
TrEMBL	A0A2S3I518	0.0	A0A2S3I518_9POAL; Uncharacterized protein
STRING	Si005811m	0.0	(Setaria italica)

Link Out ? help Back to Top
Phytozome	Pahal.G01745.3