PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01769.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28534.9 Da    PI: 6.234
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01769.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.9e-2057110456
                     -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Pahal.G01769.1  57 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 110
                     458**************9899********************************9 PP
2HD-ZIP_I/II122.91.5e-3955148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+++L+++l+e
  Pahal.G01769.1  55 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDYAALRDKFDALHARVEFLKQEKHALTAQLQE 148
                     69******************999********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-1844114IPR009057Homeodomain-like
PROSITE profilePS5007117.62151112IPR001356Homeobox domain
SMARTSM003891.6E-1954116IPR001356Homeobox domain
CDDcd000865.18E-1756113No hitNo description
PfamPF000463.7E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-2057119IPR009057Homeodomain-like
PRINTSPR000316.2E-78392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000316.2E-792108IPR000047Helix-turn-helix motif
PfamPF021835.5E-13112153IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.20.5.1709.2E-4122154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDRPDRHQFF MPVQQPQLPP PPHHHHQQLC APMMDEQASF LAGRGGGGGA AGRGERKRRF  60
TEEQIRSLES MFHAHHAKLE PREKAELARE LGLQPRQVAI WFQNKRARWR SKQLEQDYAA  120
LRDKFDALHA RVEFLKQEKH ALTAQLQELS ERLRKREDHR AASGGVAATA SSSCNGGGEE  180
AEDDKRNVVL RCVDMEPPES CVLGGACATP ADVSVESECD DHRLGYDDGF PESFCATPEL  240
WEPWPLVEWN AVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282500.0KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826405.10.0homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK02e-91HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-91HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A2S3I9150.0A0A2S3I915_9POAL; Uncharacterized protein
STRINGPavir.Ga00670.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-34homeobox 7