PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01781.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 207aa MW: 22555.8 Da PI: 11.5074

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01781.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.6	3.2e-08	21	82	1	66
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt +e+la +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + ++ Pahal.G01781.1 21 CWTPDETLAVARAYTARRLTVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 82 8*******************************99865....689************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-6	20	83	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-4	22	73	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.04	22	74	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MASPSPSPPA PASGRRVPPP CWTPDETLAV ARAYTARRLT VGREHLTSAD WAAVAAAAPS 60 KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP FFSKSQSRSP SLSPSPPPAI 120 SPPSPPSPPA SPPRKRRRDD AGDEDGLSDV VGALRAIGEG FLRAEERRME AARETQRMRM 180 EMALRHLDAQ RRLMDALVGR IVDALE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	KLRRRLR
2	72	78	LRRRLRS
3	133	137	RKRRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968665	0.0	EU968665.1 Zea mays clone 323209 hypothetical protein mRNA, complete cds.
GenBank	KJ727947	0.0	KJ727947.1 Zea mays clone pUT6045 trihelix transcription factor (THX32) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826011.1	1e-140	extensin-like
TrEMBL	A0A2S3I914	1e-139	A0A2S3I914_9POAL; Uncharacterized protein
STRING	Pavir.J28088.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24

Link Out ? help Back to Top
Phytozome	Pahal.G01781.1