PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01792.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 177aa    MW: 18897.5 Da    PI: 8.9359
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01792.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.63.7e-11151172122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     ldDgy+WrKYGqK+vk+s +pr
  Pahal.G01792.5 151 LDDGYKWRKYGQKVVKNSLHPR 172
                     59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-13136172IPR003657WRKY domain
SuperFamilySSF1182904.18E-10143173IPR003657WRKY domain
PROSITE profilePS5081112.771146172IPR003657WRKY domain
SMARTSM007743.9E-4151176IPR003657WRKY domain
PfamPF031061.9E-7152173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEGSSQFETC LPSLFSLGAL PPPLAPLPNQ HKLLQMPLFQ EQGGTYGVML SSDHHGGLYP  60
LLLPGIPFCN SSAGAGEKPT GFAVLDAGEA GTLAAKAAGE IPSTTTATFH GSSSWWKGSA  120
AEAGEKGRMK VRRKMREPRF CFQTRSDVDV LDDGYKWRKY GQKVVKNSLH PRCSSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134GRMKVRRKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679823e-60BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds.
GenBankBT0681563e-60BT068156.2 Zea mays full-length cDNA clone ZM_BFb0072A01 mRNA, complete cds.
GenBankEU9728053e-60EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7283123e-60KJ728312.1 Zea mays clone pUT6592 WRKY transcription factor (WRKY101) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825009.11e-125probable WRKY transcription factor 12
SwissprotQ93WY42e-29WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A2S3I9Q11e-127A0A2S3I9Q1_9POAL; Uncharacterized protein
STRINGPavir.Gb01200.1.p1e-102(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.14e-31WRKY family protein
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]