PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01812.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 322aa    MW: 34433.6 Da    PI: 6.1467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01812.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20138189256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Pahal.G01812.1 138 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 189
                     8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32137197IPR001471AP2/ERF domain
PfamPF008472.2E-14138188IPR001471AP2/ERF domain
SMARTSM003804.9E-37138202IPR001471AP2/ERF domain
PROSITE profilePS5103224.105138196IPR001471AP2/ERF domain
CDDcd000182.75E-30138197No hitNo description
SuperFamilySSF541719.15E-23138197IPR016177DNA-binding domain
PRINTSPR003671.6E-13139150IPR001471AP2/ERF domain
PRINTSPR003671.6E-13178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDFAADSDGF ALDFIREHLL DGGCGGVPVP VGSTGVPDDV TFPMLQPQPE FQPMSSFLPP  60
PLQQGYTHLT HEYKGAAPAA AAAASRAQYE LSATVMIKFG SEPSSPVRPA LTITVPPSSY  120
AWAESVTAAA AVDDDFRKYR GVRQRPWGKY AAEIRDPKRR GSRVWLGTYD TPVEAARAYD  180
RAAFRMRGAK AILNFPNEVG TRGADLWAPP QPPAATQAAP ANKRKRQQEE RDVEVLAVIN  240
KAVKIEMPSS SSTWPSSMST RETTASASST VTSTTTEAAG AGADWLPVTP SSGSWDQYWD  300
LGGLPPLSPH PAMGFPQLTV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-26137201468ATERF1
3gcc_A6e-26137201468ATERF1
5wx9_A8e-261381981474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275251e-104KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825916.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2S3I9040.0A0A2S3I904_9POAL; Uncharacterized protein
STRINGPavir.J21804.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-36ERF family protein