PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01813.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 344aa    MW: 36062.5 Da    PI: 4.8323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01813.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-20151201356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Pahal.G01813.1 151 YRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 201
                     9*******.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-22150209IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-32150209IPR001471AP2/ERF domain
SMARTSM003803.1E-36150214IPR001471AP2/ERF domain
PROSITE profilePS5103224.012150208IPR001471AP2/ERF domain
CDDcd000181.32E-29151209No hitNo description
PRINTSPR003671.8E-13151162IPR001471AP2/ERF domain
PfamPF008475.1E-14151200IPR001471AP2/ERF domain
PRINTSPR003671.8E-13190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAFTGDADGF ALDFIREHLL GGGCGGVAAA DSPVVSDDVN VPELPPQPEF EPMSFLPPRQ  60
EQHHQGFMGM DDLMTDEYMG GAPAVGEAAA FPEQVPAAPV IIKFGSERSP AVRQPLTIAV  120
PPSSFAWAGA ASAATPAAPA AAAVVEDFRM YRGVRQRPWG KYAAEIRDPK RRGSRVWLGT  180
YDTPVEAARA YDRAAFRMRG AKAILNFPNE VGTRDADFLA SPPAPATKAA AATSKRKRKQ  240
LENSDDVEVV AVVNKAVKVD APSSSSTQVS SSTSPSSMST RETTASSTVT STTAETGAGA  300
EWLPMTPSSG SCEQYWEALL GGLPPLSPLS PIPTLGFPQL PVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26149213468ATERF1
3gcc_A5e-26149213468ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275251e-116KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826258.10.0ethylene-responsive transcription factor 6-like
TrEMBLA0A2S3I9160.0A0A2S3I916_9POAL; Uncharacterized protein
STRINGPavir.Gb00971.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-32ethylene responsive element binding factor 5