PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01824.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 234aa    MW: 25600.3 Da    PI: 8.935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01824.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-2075129256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Pahal.G01824.1  75 RKKLRLSKDQAAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTK 129
                     788899***********************************************98 PP
2HD-ZIP_I/II127.46.3e-4175164191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+kev+eLr +l
  Pahal.G01824.1  75 RKKLRLSKDQAAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTKLKQTELDCEFLKRCCETLTEENRRLQKEVQELR-AL 164
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-1966132IPR009057Homeodomain-like
PROSITE profilePS5007117.4171131IPR001356Homeobox domain
SMARTSM003891.2E-1773135IPR001356Homeobox domain
PfamPF000463.0E-1775129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.0E-1975129IPR009057Homeodomain-like
CDDcd000867.74E-1675132No hitNo description
PRINTSPR000314.0E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6111127IPR000047Helix-turn-helix motif
SMARTSM003404.8E-24131174IPR003106Leucine zipper, homeobox-associated
PfamPF021832.1E-10131165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMERAEDLGL SLSLSSSLAA APRTHHVAAM LLRSPEKRFL EMPLLPAKRS EVTAEDGLRG  60
GSDEEDGGCG IDGSRKKLRL SKDQAAVLED SFREHPTLNP RQKAALAQQL GLRPRQVEVW  120
FQNRRARTKL KQTELDCEFL KRCCETLTEE NRRLQKEVQE LRALKLVSPH LYMHMSPPTT  180
LTMCPSCERV SSSASSAAAA STDRRAAGAV ISTAAAEGAA VCHRPIAVRA QQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379SRKKLRL
2123131RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749800.0EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283620.0KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824502.11e-169homeobox-leucine zipper protein HOX17-like
SwissprotQ01I231e-112HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLA0A2S3I9181e-167A0A2S3I918_9POAL; Uncharacterized protein
TrEMBLA0A2T7CY881e-167A0A2T7CY88_9POAL; Uncharacterized protein
STRINGSi010958m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-74homeobox-leucine zipper protein 3