PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01992.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 226aa    MW: 24130.8 Da    PI: 6.0241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01992.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1755105155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + ykGVr +   grWv+e+r+p   g r+r++lg+f tae+Aa+a++ a+++l+g
  Pahal.G01992.1  55 PVYKGVRSRN-PGRWVCEVREP--HG-RQRIWLGTFETAEMAARAHDVAALALRG 105
                     68****9666.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1255105IPR001471AP2/ERF domain
PROSITE profilePS5103221.48356113IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2056114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-3056115IPR001471AP2/ERF domain
SMARTSM003801.6E-2756119IPR001471AP2/ERF domain
PRINTSPR003675.8E-85768IPR001471AP2/ERF domain
CDDcd000186.65E-1957115No hitNo description
PRINTSPR003675.8E-87995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDWTYSGSGC GYGYYSSSPP AGGGGGGEES SYMTVSSAPP KRRAGRTKFK ETRHPVYKGV  60
RSRNPGRWVC EVREPHGRQR IWLGTFETAE MAARAHDVAA LALRGRAACL NFADSPRRLR  120
VPPQGAGHDE IRRAAVEAAE LFRPQHNAGA PEAAAAAAIA VPGAQASGGL GGDFAYYPAD  180
DGLEFEMQGY LDMAQGMLID PPAANAVQSA WIDDEYDCEV SLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13541121271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00453DAPTransfer from AT4G25480Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560440.0EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824660.11e-164dehydration-responsive element-binding protein 1E-like
SwissprotA2XWL61e-104DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2731e-104DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLA0A2S3I9J01e-163A0A2S3I9J0_9POAL; Uncharacterized protein
STRINGSi011005m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-38C-repeat-binding factor 4
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]