PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02173.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 304aa MW: 33917.6 Da PI: 9.2186

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02173.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.2e-33	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Pahal.G02173.1 20 KPRLRWTPELHQRFVDAVDRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.297	17	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-32	17	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	20	75	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.63E-17	20	75	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-10	22	73	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-6	117	144	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.1E-9	167	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MLEGSYGGGG DGGAMSRDPK PRLRWTPELH QRFVDAVDRL GGPDKATPKS VLRLMGMKGL 60 TLYHLKSHLQ KYRLGRQGKK STGLELNGSG FAAQGLSFPT PTPVPGDPSE GKNTGEMPLA 120 DALKYQIQVQ RKLQEQLEVR QVLHHYHELM LSKTFFHNTT SAYVCIQVQK KLQMRIEAQG 180 KYLKAILEKA KRNIPFDANA PSDHIDTTRS QLMDFNLALS GFMDNATRVC EESNEQLVKT 240 ISDDNHKDNL GFQLYQLGSQ EAKEGKWTPK TEDSLRLDLN IKGGYDLSSR GMQACELDLK 300 INQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824515.1	0.0	myb family transcription factor PHL11-like
TrEMBL	A0A2S3IA19	0.0	A0A2S3IA19_9POAL; Uncharacterized protein
STRING	Pavir.Gb00791.1.p	1e-166	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.G02173.1