PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02173.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 275aa MW: 30431.6 Da PI: 9.2406

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02173.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.8e-34	20	74	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Pahal.G02173.2 20 KPRLRWTPELHQRFVDAVDRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 74 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-33	17	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.297	17	77	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.1E-24	20	75	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.55E-17	20	75	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-10	22	73	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-21	117	163	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MLEGSYGGGG DGGAMSRDPK PRLRWTPELH QRFVDAVDRL GGPDKATPKS VLRLMGMKGL 60 TLYHLKSHLQ KYRLGRQGKK STGLELNGSG FAAQGLSFPT PTPVPGDPSE GKNTGEMPLA 120 DALKYQIQVQ RKLQEQLEVQ KKLQMRIEAQ GKYLKAILEK AKRNIPFDAN APSDHIDTTR 180 SQLMDFNLAL SGFMDNATRV CEESNEQLVK TISDDNHKDN LGFQLYQLGS QEAKEGKWTP 240 KTEDSLRLDL NIKGGYDLSS RGMQACELDL KINQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-22	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-22	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-22	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-22	20	76	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824515.1	0.0	myb family transcription factor PHL11-like
Swissprot	C0SVS4	8e-65	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2S3IA01	0.0	A0A2S3IA01_9POAL; Uncharacterized protein
STRING	Pavir.Gb00791.1.p	1e-173	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-56	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.G02173.2

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]