PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02182.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 331aa    MW: 35673.9 Da    PI: 9.2143
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02182.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92e-2467111145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRC +++ +++k+CErH+hrgr+rsrk++e+
  Pahal.G02182.2  67 DPEPGRCRRTDGKKWRCAKEAAPDSKYCERHMHRGRNRSRKPVEA 111
                     79****************************************996 PP
2QLQ61.72e-211247237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll++i++
  Pahal.G02182.2 12 PFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPIRR 47
                    9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-121147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2691247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-151246IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.77367111IPR014977WRC domain
PfamPF088797.1E-2168110IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSGGRWAARP APFTAAQYEE LEHQALIYKY LVAGVPVPPD LLLPIRRGFV YHQPALGYGP  60
YFGKKVDPEP GRCRRTDGKK WRCAKEAAPD SKYCERHMHR GRNRSRKPVE AQLVASPHAQ  120
QQPPAVTSGF QNQSPYPAVL AGNGVRAGGG GGGVGTGTFG LGSTAQLHMD SAAAYATAAG  180
GGSKDLRHSA YGVRSLSEYE HSQLMPAAMD TSMDNSWRLL PSQTPTFQAT SYPLFGTLSG  240
LDESTIASLP KTQREPLSFF GSDFVTVKQE SQTLRPFFDE WPKARDSWPE LGDDNSLASF  300
SATQLSISIP MATSDFSNTS SRSPSGIPSR *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5158450.0EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824805.10.0growth-regulating factor 3-like isoform X2
SwissprotQ6AWY61e-165GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A2S3IA100.0A0A2S3IA10_9POAL; Uncharacterized protein
TrEMBLA0A2T7CZJ70.0A0A2T7CZJ7_9POAL; Uncharacterized protein
STRINGSi011853m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-46growth-regulating factor 5