PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G02195.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 272aa MW: 31824.4 Da PI: 7.5141

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G02195.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.1	1.2e-23	18	100	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++Li+ar e+e++ + ++++k+ We+v+ ++rerg++r++ qCk+kw+nl +ryk ++++ ++ ++cp+f++l+ Pahal.G02195.1 18 QWGAQETRELIAARGEVEREADAaRRSAKTMWEAVAVRLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 100 7******************9735799********************************99999974....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.13E-16	17	83	No hit	No description
Pfam	PF13837	9.6E-22	18	101	No hit	No description
PROSITE profile	PS50090	7.282	19	76	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MMEAGGGGAG GRDERVPQWG AQETRELIAA RGEVEREADA ARRSAKTMWE AVAVRLRERG 60 YRRTADQCKC KWKNLVNRYK GKETSDPENG RQCPFFEELH AVFTERARNM QRQLLESESG 120 AFDKRKLKRP SGDRSSGESD GEDDGGEESE DEKPMHSRKR KADDKKQQSQ RMPEKSRSGV 180 SSIHELLQDF LTQQQRIDIQ WQETMERRAQ ERVAFEQEWR QTMQKLEQER LMLEHSWIQR 240 EEQRRMREEA RAEKRDALLT TLLNKLLQDD L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	129	DKRKLKRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824197.1	0.0	uncharacterized protein LOC112899804
TrEMBL	A0A2T7CZK3	0.0	A0A2T7CZK3_9POAL; Uncharacterized protein
STRING	Pavir.J40572.1.p	1e-159	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	6e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pahal.G02195.1