PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02547.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 245aa    MW: 26332.5 Da    PI: 10.4321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02547.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-1668117255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Pahal.G02547.1  68 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 117
                     69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3067126IPR001471AP2/ERF domain
CDDcd000181.71E-2568126No hitNo description
PROSITE profilePS5103222.58968125IPR001471AP2/ERF domain
SMARTSM003807.9E-3668131IPR001471AP2/ERF domain
PfamPF008472.7E-1068117IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2168127IPR016177DNA-binding domain
PRINTSPR003676.4E-126980IPR001471AP2/ERF domain
PRINTSPR003676.4E-12107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQGAYRSSSE ESAASPAASA AAAAAAAAMA PLAAAAAAAV KMEEQAAAAL AAGAQAPAPL  60
QQMQLRRQYR GVRMRKWGKW VAEIREPHKR TRIWLGSYAT PVAAARAYDT AVFYLRGRSA  120
RLNFPDEIPA LALAEGDGDP ARGGEPDGGT LSAASIRKKA IEVGLRVDAL QTGMMVAPPH  180
PRERQRHHHH HHHHHGHGLP QLQLHAEDEH RRQEQKQQQR AAWSGRAKNP DLNRAPSPES  240
SDAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1467128466ATERF1
3gcc_A6e-1467128466ATERF1
5wx9_A8e-14681271474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669061e-145EU966906.1 Zea mays clone 298090 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826193.11e-173ethylene-responsive transcription factor RAP2-10-like
TrEMBLA0A2S3IAZ31e-171A0A2S3IAZ3_9POAL; Uncharacterized protein
STRINGPavir.J27349.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-42DREB and EAR motif protein 3