PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02550.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 241aa    MW: 26227.8 Da    PI: 9.7352
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.5e-2085144357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R++++++q+++Le l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  Pahal.G02550.1  85 TRWNPSPDQIKVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 144
                     8*****************99**************************************97 PP
2Wus_type_Homeobox114.74.4e-3784146365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P+p+Qik+Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq
     Pahal.G02550.1  84 TTRWNPSPDQIKVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 146
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.97780145IPR001356Homeobox domain
SMARTSM003891.6E-782149IPR001356Homeobox domain
SuperFamilySSF466899.64E-1383150IPR009057Homeodomain-like
CDDcd000866.50E-685146No hitNo description
PfamPF000461.2E-1785144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-885144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRLHHFHVAA YLEKAASTSS SPPSISSPSL SSSAALPLGA LQCLRPLAPK ISFPEARKMV  60
VLPEFARVRN ASRLLNCTVP ASGTTRWNPS PDQIKVLEML YRGGMRTPNS FQIEQITEEL  120
GKYGRIEGKN VFYWFQNHKA RERQKQKRAA LLTLSTTTSS LPEAETKVTI HGSHACDGLG  180
KKEEASSSED ASIRKRRCRA WGDVHGDVTT TAGAGAEVVA DCADDVTLEL FPLRPQGKAN  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355181e-105BT035518.1 Zea mays full-length cDNA clone ZM_BFb0067L08 mRNA, complete cds.
GenBankBT0851951e-105BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds.
GenBankEU9642751e-105EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823100.11e-180WUSCHEL-related homeobox 4-like isoform X1
SwissprotQ25AM22e-88WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV32e-88WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A2S3IB061e-139A0A2S3IB06_9POAL; Uncharacterized protein
STRINGPavir.Ga00299.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.13e-39WUSCHEL related homeobox 4